Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq89412 120 1e-22 >seq89412 Length=862 Score = 120 bits (132), Expect = 1e-22 Identities = 434/673 (64%), Gaps = 27/673 (4%) Strand=Plus/Minus Query 34263 CCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTG 34322 |||||| ||||| ||||| ||||||||||||| || ||||| | ||||| | Sbjct 747 CCAGCAGGCGTCGGTTGTTGAACCAGTCCACCCATTCCAGGGTGGCGAACTCCACGGCCT 688 Query 34323 CACGGTTTTTCCA------GCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGA 34376 | | | ||| || | ||||| || ||||| || ||| | || || |||| Sbjct 687 CGAAGCTCCGCCACGGACCGCGC---CGGTGGATCACCTCGGCCTTGAACAGGCCGTTGA 631 Query 34377 TGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATC 34436 |||||||||| | ||||| || || || ||||| || || || | | | | | Sbjct 630 TGCTCTCAGCGAGGGCGTTATCGTAGGAATCGCCGACGCTGCCGACCGAGGGCTGGACGC 571 Query 34437 CGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGT 34496 | || || || ||||| || ||| ||| | | ||||| || || | || || Sbjct 570 CCGCCTCGACGAGGCGCTCGGTGTAGCGCAGCGCAAGGTACTGCGACCCCCTGTCCGAGT 511 Query 34497 GATGGATG--------GTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCAT 34547 | || | | || | ||||| ||| || || ||||||||||| || | Sbjct 510 GGTGCACGAGCCCGTCGTTTCGGACGGGACGGCGCTGGTGCAGGGCCTGCTCCAGGGCGT 451 Query 34548 CCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAA 34607 |||||||||| ||| | || | ||| || ||||| || |||||| | ||||| Sbjct 450 CCAGCACGAAGCTCGCGTGGGCAGCCCGTGACACGCGCCAACCGACGATGCGCCGGGCAA 391 Query 34608 ACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAAT 34667 | | || |||| || ||||| ||||||||||| ||| || ||||| || || | Sbjct 390 AGGCGTCGATGACGAATGCCACGTAGACGAAGCCTGACCAGGTCGCCACGTAGGTGAAGT 331 Query 34668 CAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGGCTTTACGCGGTCGCCTG 34727 | ||||||| | || || |||| |||||| | || ||||||| || | Sbjct 330 CGCTGACCCACAAGGCATTTGGCCGCGGTGCCCTGAACTGGCGGTTGACGCGGT--CCAG 273 Query 34728 C-GGCAA-CGGCTTTCCGGCT----GATGGTCGTACGGACCTTTTTACCCCGGAGAACAC 34781 | ||||| |||| |||| | |||||| || || |||||| | ||||| | || | Sbjct 272 CGGGCAAGCGGC-AGCCGGGTCAGGGATGGTGGTGCGAACCTTTCTGCCCCGCACCACCC 214 Query 34782 CGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTT 34841 | || ||||| | ||| || ||||| || ||||| | |||| | ||| |||| Sbjct 213 CTTTCAGCCCCATGCGCCGCATCAGGCGTGCGACCGTACAACGGGCCGTCACGATCCCTT 154 Query 34842 CCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATA 34901 |||| | ||| ||||| || || ||||| ||||| || || || | ||| | | Sbjct 153 CCCGCGCGAGCTGCCGCCAAACCTTGCGCACGCCGTAGACATGGAAGTTCGCCTCGAACA 94 Query 34902 CGCGCTGTATCTC 34914 ||||| | ||||| Sbjct 93 CGCGCCGGATCTC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198433510990362