Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq89412 120 1e-22
>seq89412
Length=862
Score = 120 bits (132), Expect = 1e-22
Identities = 434/673 (64%), Gaps = 27/673 (4%)
Strand=Plus/Minus
Query 34263 CCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTG 34322
|||||| ||||| ||||| ||||||||||||| || ||||| | ||||| |
Sbjct 747 CCAGCAGGCGTCGGTTGTTGAACCAGTCCACCCATTCCAGGGTGGCGAACTCCACGGCCT 688
Query 34323 CACGGTTTTTCCA------GCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGA 34376
| | | ||| || | ||||| || ||||| || ||| | || || ||||
Sbjct 687 CGAAGCTCCGCCACGGACCGCGC---CGGTGGATCACCTCGGCCTTGAACAGGCCGTTGA 631
Query 34377 TGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATC 34436
|||||||||| | ||||| || || || ||||| || || || | | | | |
Sbjct 630 TGCTCTCAGCGAGGGCGTTATCGTAGGAATCGCCGACGCTGCCGACCGAGGGCTGGACGC 571
Query 34437 CGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGT 34496
| || || || ||||| || ||| ||| | | ||||| || || | || ||
Sbjct 570 CCGCCTCGACGAGGCGCTCGGTGTAGCGCAGCGCAAGGTACTGCGACCCCCTGTCCGAGT 511
Query 34497 GATGGATG--------GTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCAT 34547
| || | | || | ||||| ||| || || ||||||||||| || |
Sbjct 510 GGTGCACGAGCCCGTCGTTTCGGACGGGACGGCGCTGGTGCAGGGCCTGCTCCAGGGCGT 451
Query 34548 CCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAA 34607
|||||||||| ||| | || | ||| || ||||| || |||||| | |||||
Sbjct 450 CCAGCACGAAGCTCGCGTGGGCAGCCCGTGACACGCGCCAACCGACGATGCGCCGGGCAA 391
Query 34608 ACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAAT 34667
| | || |||| || ||||| ||||||||||| ||| || ||||| || || |
Sbjct 390 AGGCGTCGATGACGAATGCCACGTAGACGAAGCCTGACCAGGTCGCCACGTAGGTGAAGT 331
Query 34668 CAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGCGGCTTTACGCGGTCGCCTG 34727
| ||||||| | || || |||| |||||| | || ||||||| || |
Sbjct 330 CGCTGACCCACAAGGCATTTGGCCGCGGTGCCCTGAACTGGCGGTTGACGCGGT--CCAG 273
Query 34728 C-GGCAA-CGGCTTTCCGGCT----GATGGTCGTACGGACCTTTTTACCCCGGAGAACAC 34781
| ||||| |||| |||| | |||||| || || |||||| | ||||| | || |
Sbjct 272 CGGGCAAGCGGC-AGCCGGGTCAGGGATGGTGGTGCGAACCTTTCTGCCCCGCACCACCC 214
Query 34782 CGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTT 34841
| || ||||| | ||| || ||||| || ||||| | |||| | ||| ||||
Sbjct 213 CTTTCAGCCCCATGCGCCGCATCAGGCGTGCGACCGTACAACGGGCCGTCACGATCCCTT 154
Query 34842 CCCGTAACAACTGACGCCAGACTTTACGCACACCGTACACCTGATGATTTTCATCGTATA 34901
|||| | ||| ||||| || || ||||| ||||| || || || | ||| | |
Sbjct 153 CCCGCGCGAGCTGCCGCCAAACCTTGCGCACGCCGTAGACATGGAAGTTCGCCTCGAACA 94
Query 34902 CGCGCTGTATCTC 34914
||||| | |||||
Sbjct 93 CGCGCCGGATCTC 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 198433510990362
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |