Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq35216 235 2e-57 seq85577 114 5e-21 seq65589 105 3e-18 seq65588 84.2 9e-12 >seq35216 Length=2640 Score = 235 bits (260), Expect = 2e-57 Identities = 719/1081 (67%), Gaps = 33/1081 (3%) Strand=Plus/Minus Query 53841 CGCTGGATTTGGACGGACACGAAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAAC 53900 |||||| | ||| |||| | | || || |||||||| | | |||||| || | Sbjct 1353 CGCTGGGTGTGGCAGGACGCCGATCGGGCGGACCGGCTGTCCCGCATCTACAATGACCGC 1294 Query 53901 TTCAACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCG 53960 ||||||||| | | ||||| |||||||| |||||| ||||||||||| ||| Sbjct 1293 TTCAACAACCTGGTGCCGCGGTCCTTCGACGGGAGCCACCTGCAGCTGCCGGGCGCGTC- 1235 Query 53961 CTGCGCT-TCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGG 54019 | ||| || | |||||| |||||||||| | |||||||| | ||| ||| | || Sbjct 1234 CAGCGTGATCCAGATGCGCGGCCACCAGAAGCGGGTGATCTGGCGGGTCAT-CAGCACGG 1176 Query 54020 CGAT-ATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACCG 54078 | | ||| |||| ||||| |||||||| || ||||| ||| | ||| |||| | Sbjct 1175 GCACGACCTACATCGCCCACGCGGTCGGCGCCGGGAAGACCTTCTCCATGGCCGCGGCGA 1116 Query 54079 GCATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTACGCGGTGCCGAACCACA 54138 ||||||| |||||||||| |||||| | |||| | ||| | ||||||| | || Sbjct 1115 TCATGGAGCAGCGCCGGCTCGGCCTGGTGACCAAGGCCATGATGGTGGTGCCGGGC-ACT 1057 Query 54139 TGCTGGCGCAATTCGCGC-GCGAGTTTCTTGAGCTGTACCCGGCCGCGAACATCATGGTC 54197 |||||||| || || ||||||| || ||| |||||| ||| | ||| ||||| Sbjct 1056 GCCTGGCGCAGG-CGAGCCGCGAGTTCCTGCTGCTCTACCCGAACGCCCAGATCCTGGTC 998 Query 54198 GCGGACGAGCAGAATTTCCACACGCACAACCGCCGCCGGTTCGTCGCGCAGGCCGCGCTC 54257 ||||||||| || ||| | | || || | || ||| | || | |||||| Sbjct 997 GCGGACGAGACCAACTTCGCCCGTGAGAAGCGGCAGCGCTTCCTGGCCCGGGCCGCCACG 938 Query 54258 AACAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGGTCGCATC--GGCATGTCCG 54315 || | |||| ||||||||||| ||| || ||| |||| ||| | | Sbjct 937 GGCACCTGGGACTGCATCATCATCACCCACAGCGCCTTCAAGTTCATCCCGGCTCCTGC- 879 Query 54316 ACGAGTATGCGTCGCAGTTCATCAGCGACCAGATCGACGAGTG--GAAAACCGCGCTCGC 54373 || ||| | | | | | ||| || |||||| | ||| | ||| ||| | Sbjct 878 AC-AGTTCGAGAAGGGGCTGATCGACGCGCAGATCCA-GAGCTACGTCGACCT-GCTGGA 822 Query 54374 CGAGACGGACAAGAGCGACCGCATCACGCGTAAGCAGATCGAGCGCCGTATCGAGCAGCT 54433 | ||||| |||||||||||| || |||| | | ||||| | | |||| || Sbjct 821 GCGGGTGGACAGCGACGACCGCATCACCCGCAAGCGGCTGGAGCGGCTGAAGGAGC-GCA 763 Query 54434 CGAACGCCG-GCTGGAGGCAAAGCAGGGCAACGAGAAGAAGGACAAGGTGCTGTCGTTCG 54492 | | ||| ||||||||| || | || | ||| | |||| ||||| | ||| Sbjct 762 TGGAGGCCAAGCTGGAGGC---GCTCGCCACCCGCAAGGACGACA---TGCTGACCATCG 709 Query 54493 AGGAGCTGGGCGTCGACCGCCTGTTCGTCGACGAGTTCCACGAATTCCGCAAACTCGACT 54552 ||| | |||||||||| ||| | || |||||| || || ||| | || || || Sbjct 708 GCGAGATCGGCGTCGACCAGCTGGTGGTGGACGAGGCGCAGGAGTTCAGGAAGCTGAGCT 649 Query 54553 TCGCGACGCAGCAGGGCAA-CATCAAGGGCATCGACCCGGCCGGCTCGCAGCGCGCGATG 54611 |||| || || || ||| | | | || || ||| ||||| ||| ||||||||||| | Sbjct 648 TCGCCAC-CAACATGGCCAGCCTGAAAGGGATCAGCCCGGACGGTTCGCAGCGCGCCTGG 590 Query 54612 GACCTGTTCATGAAGGCGCAATACCTGCGCTC-GAAGAAGCCGGGCCGCGCGCTCGTCGC 54670 ||||| | | ||| ||| ||| | ||| | || |||||| || || || Sbjct 589 GACCTCTACGCCAAGTCGCGCTACAT-CGCGCAGACCCAGCCGGCGCGGAACCTGATCCT 531 Query 54671 CGCGTCGGGCACGCCGATCACGAACACGATGGGCGAGCTGTTCACGGTGCAACGCTTCTT 54730 |||||||||||||||||||| ||||| ||||||||| |||||| |||| |||||| | Sbjct 530 GGCGTCGGGCACGCCGATCACCAACACCATGGGCGAGATGTTCAGCCTGCAGCGCTTCAT 471 Query 54731 CCAGCCCGAGCAGATGGCCGAGGACGGTCTGGACACGTTCGACGCGTGGGC--GAACCAG 54788 ||||| || | ||| ||| ||| ||| || ||||||||| ||||| ||| Sbjct 470 GCAGCCGGACGTGCTGGAGGAGCGCGGCCTGCACGAGTTCGACGCCTGGGCCTCGACC-- 413 Query 54789 TACGGCGACGTCGTGGCGGGCTTCGAGCAGAACGCGGCGGGCGGCTATGAAGTCGTCAGC 54848 | ||||||| ||| ||| | |||| | | || | ||| ||| | || | Sbjct 412 TTCGGCGACACGGTGACGGAACTGGAGCTGCAGCCGTCCGGCAACTACCAGCCGGTGACG 353 Query 54849 CGCTTCGCGAAGTTCCAGAACGTGCCGGAGCTGATGCGCCGCG-TGCGCTCGTTCATGGA 54907 || |||||||| ||| |||||| |||| ||||| |||| | | |||||| || ||| Sbjct 352 CGGTTCGCGAACTTCGTCAACGTGGCGGACCTGAT-CGCCATGTTCCGCTCGGTCGCGGA 294 Query 54908 C 54908 | Sbjct 293 C 293 >seq85577 Length=924 Score = 114 bits (126), Expect = 5e-21 Identities = 217/307 (71%), Gaps = 22/307 (7%) Strand=Plus/Minus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 ||||||||| |||||| |||||||||||||||| ||| || ||| | |||| ||| Sbjct 794 CGTCAACAAGGTCATCATCGTCGGCAATCTCGGGCGCGATCCCGAATCGCGCTCGTTCCA 735 Query 9179 GAGCGGCGACGCAA--TCTCCAATATCCGTCTCGCGACGACCGA-TCGCTACAAGGACAA 9235 || ||||| |||| || || | || ||||||| | ||| ||| | |||||| Sbjct 734 GAACGGCG--GCAAGGTCGTGAACCTGCGCATCGCGACCAGCGAGTCG-TGGAAGGAC-- 680 Query 9236 GGCGA--GCGGCGAGTTCAAGG-AAGTGACCGAGTGGCACCGCGTCGCTTTCTT---CGG 9289 || | ||||||| ||||| || |||||| ||||| ||||| |||| || Sbjct 679 CGCAATTCCGGCGAGCGCAAGGAAAAAGACCGAATGGCATTCGGTCGCGATCTTCAACGA 620 Query 9290 CCGCCTCGCCGAGATCGTCGACGAGC---ACCTTCGCAAGGGCGCATCGGTCTACATCGA 9346 |||||||| | ||||| ||||| ||| |||||||| | ||| |||||||| Sbjct 619 AGGCCTCGCC---AACGTCGCCGAGCGTTTCCTGCGCAAGGGGTCCAAGGTTTACATCGA 563 Query 9347 GGG-GCGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCG 9405 ||| |||| | |||| || || ||||||||||| |||||||| |||| |||| Sbjct 562 GGGCGCGC-TGCAGACCCGCAAATGGCAGGATCAGCAGGGCCAGGACAAGTACAGCACCG 504 Query 9406 AGATCGT 9412 ||||||| Sbjct 503 AGATCGT 497 >seq65589 Length=857 Score = 105 bits (116), Expect = 3e-18 Identities = 201/293 (69%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 ||||||||| || || || || ||||||||||| ||||||||| | |||| |||| Sbjct 104 CGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGACCCGGAGATCCGCCGCCTCGG 163 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGA-TCGCTACAAGGACAAGG 9237 ||||| | ||| ||| | || ||||||| | || ||| | |||||||||| Sbjct 164 CTCGGGCGATCCGGTCTGCAACCTGCGGATCGCGACCTCGGAGTCG-TGGAAGGACAAGG 222 Query 9238 CGAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCT---TCGGCCGCC 9294 | ||||||| |||||| ||||||||||||| |||| ||| || | || Sbjct 223 CCTCCGGCGAGCGCAAGGAGAAGACCGAGTGGCACTCGGTCGTGATCTACAACGACAACC 282 Query 9295 TCGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCA 9354 | || | | | ||| || |||| ||||||||| | |||||||||||| || | Sbjct 283 TGTCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACATCGAAGGTCAGT 342 Query 9355 TCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAG 9407 | |||| ||||||||| || || |||||| || ||||| |||||| Sbjct 343 TGCAGACCCGGAAGTGGACCGACCAGTCCGGCGTCGAGAAGTACACCACCGAG 395 >seq65588 Length=573 Score = 84.2 bits (92), Expect = 9e-12 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 ||||||||| || || || || ||||||||||| ||||||||| | ||| |||| Sbjct 383 CGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGACCCGGAGATGCGCCGCCTCGG 442 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGC 9238 |||||| | ||| ||| | || || ||||| |||| || ||||||||||| Sbjct 443 CTCGGGCGACCCGGTCTGCAACCTGCGGCTGGCGACCTCCGAGTCCTGGAAGGACAAGGC 502 Query 9239 GAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCAC 9272 ||||||| |||||| ||||||||||||| Sbjct 503 CTCCGGCGAGCGCAAGGAGAAGACCGAGTGGCAC 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200236659857604