Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq112858 147 6e-31 seq99257 87.8 5e-13 >seq112858 Length=569 Score = 147 bits (162), Expect = 6e-31 Identities = 179/239 (75%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 8778 GATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGC 8837 ||| ||| | |||||||||||||| |||||| | | | |||| || || | || | Sbjct 569 GATCGTCATCGACTACCTGCAGCTCATGTCGAGCG--GTAAGCGGGTC-GAGAGCCG--C 515 Query 8838 CACC--GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTT 8895 || | ||| || ||| | ||||| || || || | | |||||||| |||| ||| Sbjct 514 CAGCAGGAGATCAGCGAGTTCTCGCGGGCGCTGAAGCTGCTCGCGAAGGAGCTCGGCGTG 455 Query 8896 CCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCC 8955 ||| ||||||||||||||||||| || |||||| ||| | ||| | ||||||||||| Sbjct 454 CCGGTCATCGCGCTGTCGCAGCTGAACCGAGGGTCGGAGCAGCGCGCGGACAAGCGGCCC 395 Query 8956 GTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGA---CGTGATCCT 9011 | || ||||| || ||||||||||| ||||||||||||| ||||| ||||||||| Sbjct 394 GCGATCTCCGACCTCCGCGAGTCGGGGTCGATCGAGCAGGACGCCGACATCGTGATCCT 336 >seq99257 Length=723 Score = 87.8 bits (96), Expect = 5e-13 Identities = 114/154 (74%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 8878 GCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAAT 8937 || ||||| || | || ||||||||||| ||||||||||| || | ||||||| Sbjct 673 GCCAAGGAGCTGGCGGTGCCGATCATCGCCCTGTCGCAGCTGTCGCGTCAGGTCGAGAAC 614 Query 8938 CGCCCAAACAAGCGGCCCGTCA--TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGG 8995 ||| ||||||| |||| || | || || |||||||| ||||| |||||||||||| Sbjct 613 CGCGACGACAAGCG-CCCG-CAGCTCTCGGACCTGCGCGAATCGGGCTCGATCGAGCAGG 556 Query 8996 ATGCCGACGTGATCCTCTTTATCTACCGCGATGA 9029 | ||||||||| | | || | | |||||| || Sbjct 555 ACGCCGACGTGGTGATGTTCGTGTTCCGCGAGGA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127343265566244