Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_013650.1 Length=155445 Score E Sequences producing significant alignments: (Bits) Value seq82408 91.5 1e-13 seq54899 91.5 1e-13 seq87011 89.7 5e-13 seq96416 84.2 2e-11 seq70008 84.2 2e-11 >seq82408 Length=976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 114875 ACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGGTTCA 114934 ||||| | | ||||||||||||||| |||| ||||| || || | ||||| | || Sbjct 892 ACGGCCTGATCGTCTACCAGGAGCAGGTGATGGCGACCGCGCAGAAGGTCGCCGGCTACA 833 Query 114935 CCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAGATCATCA 114994 ||| |||| ||||||| | |||||| || || ||||||||||||| ||||||| || Sbjct 832 CCCTGGGCCAGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGAAGAAGGAGATCCTCG 773 Query 114995 ACG 114997 ||| Sbjct 772 ACG 770 >seq54899 Length=627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 113819 GCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCGA 113878 ||| |||||| ||||| |||| ||| |||| |||| | | ||||||||| || Sbjct 279 GCCAGGGCCGCGGCTCGGCCGCGAACTCCGCGGTCTGCTACCTGCTCGGCATCACCGCGG 220 Query 113879 TCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGCCCCGACT 113938 ||||| ||||||||| ||||||| ||||||||||||| || | || ||| ||| Sbjct 219 TCGACTCGATCAAGTTCGACCTGCCGTTCGAGCGCTTCCTCTCCTCGCTGCGCGACGAGG 160 Query 113939 TCCCCGACATCGACGTCGACTTC 113961 || ||||||||||| |||||| Sbjct 159 AGCCGGACATCGACGTGGACTTC 137 >seq87011 Length=895 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/147 (74%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 113817 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 113876 |||||| ||||| || |||| || |||||| ||| | |||| ||| | |||||| Sbjct 76 CGGCCCCGGCCGCGGGTCCGGCGCCGGCTCGATGGCGGCGTACGCGATGCGGATCACCGA 135 Query 113877 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 113934 | |||||| | || ||| ||||| |||||||| ||| | ||||| |||||| | | Sbjct 136 CCTGGACCCGCTGCAGCACGGGCTGATCTTCGAGCGGTTCCTGAACCCCGACCGCGTCTC 195 Query 113935 GACTTCCCCGACATCGACGTCGACTTC 113961 || | |||||| |||||||||||||| Sbjct 196 GA--TGCCCGACTTCGACGTCGACTTC 220 >seq96416 Length=762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 114871 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 114930 |||||||||||| ||||||||||||||||| |||| | | |||| ||| ||| ||| Sbjct 500 ACCTACGGCATCATGGTCTACCAGGAGCAGGTGATGCAGATCGCCCAGGTCATGGGCGGC 441 Query 114931 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGA 114979 | ||| ||||| |||||| | |||||| || || |||||||||| Sbjct 440 TATTCCCTGGGCGGGGCCGACCTGCTGCGCCGGGCGATGGGCAAGAAGA 392 >seq70008 Length=771 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 113817 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCA-TGGGCATCACCT 113875 |||||||||||| ||||||| || ||||||||||| | | ||| || ||||||| Sbjct 260 CGGCCCGGGCCGCGGCTCCGGCGCCGGCTCGCTGGTGGCGTG-GTCGCTGCTCATCACCG 318 Query 113876 CGATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CC 113933 |||||||| | | || |||| |||||||||||||| ||||||| || ||| | Sbjct 319 ATCTCGACCCGCTGCGCTTCGGCCTGCTGTTCGAGCGCTTCCTCAACCCCGAGCGCGTCT 378 Query 113934 CGACTTCCCCGACATCGACGTCGACTTC 113961 ||| | || || ||||| |||||||| Sbjct 379 CGA--TGCCGGATTTCGACATCGACTTC 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496465584058200