Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq11270 206 4e-48
seq78534 116 6e-21
>seq11270
Length=18388
Score = 206 bits (228), Expect = 4e-48
Identities = 555/841 (66%), Gaps = 27/841 (3%)
Strand=Plus/Plus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
|||||||||| || |||||||| || | || || || ||||| | | |||||||
Sbjct 5216 TCTTCTCGAAGAAATTGGTCTTTCCTTGCAACGAAATCAGCTCCATCCAATCAAATGGGT 5275
Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767
||| || | ||| || | | || | || ||| | |||||| |||||||| |
Sbjct 5276 TCTGAACATTGTAGATTTTGCCACACCCCAACGCGCCCAAAAGCCTGTCAGCCACAAACT 5335
Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827
||||||| | |||| | || | ||| ||||| | || | ||| ||||| ||
Sbjct 5336 CGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCAACGCGCAGGGCAGCGCGTCGC 5395
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887
||| ||||||| |||| || || ||||| ||| || ||| | || || || | |
Sbjct 5396 ACACAAACTCCCTCTCTATATCCACCGCGTCGCGAACGATCCCCTTCACGCGCTCCTCGC 5455
Query 159888 CCGGCTT---GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944
| |||| || ||| | || | || |||||||| || |||||||| || |
Sbjct 5456 TCAGCTTCTTGCGCAAGAGAGTGT------AGAGCAGGCACGCGAAATCGCAGTGGAGGC 5509
Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004
| ||||| || ||||| ||||||||||| | | | | || ||||| | ||| ||| ||
Sbjct 5510 CTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTT 5569
Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063
| |||||||| || | |||| |||| |||| || || || || || ||| || ||
Sbjct 5570 TTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAAAATGCCTTCGACGCAGGCGAAA 5628
Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123
|| | ||||||||| | || || | | ||| | |||||| |||||| ||
Sbjct 5629 GCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTC---GATCCACCGCAGGGCCCACTCG 5685
Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183
|||||||| || | ||| || | | ||| | |||| |||| | || || ||| |
Sbjct 5686 GCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTCGGCC 5745
Query 160184 ACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239
|||||||| || ||||| || ||||||||| | ||| | ||| ||
Sbjct 5746 GAGTCCTTGATATAGGTCTCGAGCAAGAGACT----GTACATTTCAGAGTGGATATTCTC 5801
Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGA 160298
||| || ||||| ||| |||||| |||||| || || || ||||||| |||
Sbjct 5802 GATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCC-GAAACTTGGACCTCCTTCATGA 5860
Query 160299 ACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGT 160358
||||| ||||||| | ||| | ||||||| ||| || ||||| || | |||||
Sbjct 5861 ACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGT 5920
Query 160359 GAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGG 160418
||| || ||| || |||||| | | | | || ||||||||||| | ||| ||
Sbjct 5921 GAGTGACGAAGTGCCTCTCGCCGTCGGTTAG---GTTTTCCCAGTGACGTAAGTCGCCGG 5977
Query 160419 CCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGA 160478
| ||| ||||| || ||| |||| | |||| || | |||||||| ||||||
Sbjct 5978 AGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAGA 6037
Query 160479 T 160479
|
Sbjct 6038 T 6038
>seq78534
Length=1057
Score = 116 bits (128), Expect = 6e-21
Identities = 343/521 (66%), Gaps = 22/521 (4%)
Strand=Plus/Minus
Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942
||| | ||| |||||||| | ||| |||| | | |||| | || |||||
Sbjct 610 CTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCT 551
Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002
||||||||| |||| || ||||||| |||||| || | || |||| ||||||
Sbjct 550 CTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGC--- 494
Query 205003 CAGAATGTGGGT---CCACAATTCGCGAGCCTCCA----CTTGCTTCACGTACATCCCTT 205055
| |||| || ||||| || |||||| | || || | | | | | ||||
Sbjct 493 CTCAATGATGGCATACCACAGTTTCTGAGCCTTAATTGTCTGGCGGCCCTTTCCTGCCTT 434
Query 205056 GAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTG 205115
||| ||||| ||| ||| ||| | || || ||||| ||| || || |
Sbjct 433 ----CTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCAG 378
Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTG-ATCGTCTTTCACCCTCTCCATAAAC 205174
|||||| |||||||||||||| | ||| |||| || | || || | || ||| ||
Sbjct 377 GACATTCATTGGGACACATCAGTGTCCAG-TCTGCATTCTTTTCTACTCGCTTCATGAAT 319
Query 205175 AGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGG 205234
||||| ||||| || |||| || ||||| | ||| || | | | || | || ||
Sbjct 318 AGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGG 259
Query 205235 TTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294
|||||| |||||| ||||| | | || |||||||| ||||| | | | |||
Sbjct 258 TTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCG 199
Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTG---AAA 205351
| || ||||| |||||||| || || || || || |||| || | |||| ||
Sbjct 198 AAGGCACCTGGTCTCTTGTTGCCGCCTTGATCGACGTACCGAG-CA--GTGTTGTCAAAG 142
Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
||||||||||| ||| ||||||||| | || ||||| ||
Sbjct 141 ACTCGCAGCATAGGCGTCAGACCGTTCGAAGTGCCGTTTGT 101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 793827400149840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |