Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq11270 206 4e-48 seq78534 116 6e-21 >seq11270 Length=18388 Score = 206 bits (228), Expect = 4e-48 Identities = 555/841 (66%), Gaps = 27/841 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || |||||||| || | || || || ||||| | | ||||||| Sbjct 5216 TCTTCTCGAAGAAATTGGTCTTTCCTTGCAACGAAATCAGCTCCATCCAATCAAATGGGT 5275 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || | ||| || | | || | || ||| | |||||| |||||||| | Sbjct 5276 TCTGAACATTGTAGATTTTGCCACACCCCAACGCGCCCAAAAGCCTGTCAGCCACAAACT 5335 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||| | |||| | || | ||| ||||| | || | ||| ||||| || Sbjct 5336 CGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACCAACGCGCAGGGCAGCGCGTCGC 5395 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||||| |||| || || ||||| ||| || ||| | || || || | | Sbjct 5396 ACACAAACTCCCTCTCTATATCCACCGCGTCGCGAACGATCCCCTTCACGCGCTCCTCGC 5455 Query 159888 CCGGCTT---GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 | |||| || ||| | || | || |||||||| || |||||||| || | Sbjct 5456 TCAGCTTCTTGCGCAAGAGAGTGT------AGAGCAGGCACGCGAAATCGCAGTGGAGGC 5509 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | ||||| || ||||| ||||||||||| | | | | || ||||| | ||| ||| || Sbjct 5510 CTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTT 5569 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| |||| || || || || || ||| || || Sbjct 5570 TTAGCCAAAATATCG-CGCAGAAGCTACCGGAGAAGAAAATGCCTTCGACGCAGGCGAAA 5628 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || | ||||||||| | || || | | ||| | |||||| |||||| || Sbjct 5629 GCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTC---GATCCACCGCAGGGCCCACTCG 5685 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 |||||||| || | ||| || | | ||| | |||| |||| | || || ||| | Sbjct 5686 GCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTCGGCC 5745 Query 160184 ACATCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 |||||||| || ||||| || ||||||||| | ||| | ||| || Sbjct 5746 GAGTCCTTGATATAGGTCTCGAGCAAGAGACT----GTACATTTCAGAGTGGATATTCTC 5801 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGA 160298 ||| || ||||| ||| |||||| |||||| || || || ||||||| ||| Sbjct 5802 GATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCC-GAAACTTGGACCTCCTTCATGA 5860 Query 160299 ACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGT 160358 ||||| ||||||| | ||| | ||||||| ||| || ||||| || | ||||| Sbjct 5861 ACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGT 5920 Query 160359 GAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGG 160418 ||| || ||| || |||||| | | | | || ||||||||||| | ||| || Sbjct 5921 GAGTGACGAAGTGCCTCTCGCCGTCGGTTAG---GTTTTCCCAGTGACGTAAGTCGCCGG 5977 Query 160419 CCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGA 160478 | ||| ||||| || ||| |||| | |||| || | |||||||| |||||| Sbjct 5978 AGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAGA 6037 Query 160479 T 160479 | Sbjct 6038 T 6038 >seq78534 Length=1057 Score = 116 bits (128), Expect = 6e-21 Identities = 343/521 (66%), Gaps = 22/521 (4%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | ||| |||||||| | ||| |||| | | |||| | || ||||| Sbjct 610 CTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCT 551 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||||||||| |||| || ||||||| |||||| || | || |||| |||||| Sbjct 550 CTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGC--- 494 Query 205003 CAGAATGTGGGT---CCACAATTCGCGAGCCTCCA----CTTGCTTCACGTACATCCCTT 205055 | |||| || ||||| || |||||| | || || | | | | | |||| Sbjct 493 CTCAATGATGGCATACCACAGTTTCTGAGCCTTAATTGTCTGGCGGCCCTTTCCTGCCTT 434 Query 205056 GAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTG 205115 ||| ||||| ||| ||| ||| | || || ||||| ||| || || | Sbjct 433 ----CTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCAG 378 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTG-ATCGTCTTTCACCCTCTCCATAAAC 205174 |||||| |||||||||||||| | ||| |||| || | || || | || ||| || Sbjct 377 GACATTCATTGGGACACATCAGTGTCCAG-TCTGCATTCTTTTCTACTCGCTTCATGAAT 319 Query 205175 AGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGG 205234 ||||| ||||| || |||| || ||||| | ||| || | | | || | || || Sbjct 318 AGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGG 259 Query 205235 TTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||||| |||||| ||||| | | || |||||||| ||||| | | | ||| Sbjct 258 TTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCG 199 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTG---AAA 205351 | || ||||| |||||||| || || || || || |||| || | |||| || Sbjct 198 AAGGCACCTGGTCTCTTGTTGCCGCCTTGATCGACGTACCGAG-CA--GTGTTGTCAAAG 142 Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||||||||||| ||| ||||||||| | || ||||| || Sbjct 141 ACTCGCAGCATAGGCGTCAGACCGTTCGAAGTGCCGTTTGT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793827400149840