Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq12926 111 1e-19 seq13269 109 4e-19 seq1750 104 2e-17 seq11477 98.7 7e-16 seq8957 95.1 8e-15 seq16751 93.3 3e-14 seq10846 82.4 5e-11 >seq12926 Length=15191 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||||| ||| ||| || || || ||||||||||| | ||| | || ||| Sbjct 315 ACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTCCTCC 374 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| ||| | || || | | |||||| |||| ||| | |||||| ||||| Sbjct 375 AATTGTTTACCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 434 Query 39631 ATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 || || || | ||| | ||| ||||| | ||| ||||| |||| || || ||||| Sbjct 435 ATCTTGGCCTTGA-CGTTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTTTT 493 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||||| |||||||||||||| Sbjct 494 TCCGGTTAGGGTTTTCACGAAGATCTGCAT 523 >seq13269 Length=14915 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| || ||||| || | ||| |||||| || || || |||| Sbjct 13440 CATC-CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAAT 13382 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| || |||| ||||| ||||| || |||| || | | |||||| || | Sbjct 13381 CAGCCAAAGTTCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTG 13322 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || ||||| ||||||| ||| | | ||| ||| || | ||| | Sbjct 13321 GTGGGATTCCCTCCTTGTCCTGTATTTTTGCTTTGACATTATCTATTGTATCAGAGCTCT 13262 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | ||| || || || || || | |||||| |||||||||||||| Sbjct 13261 CGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACGAAGATCTGCAT 13210 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||||||||| ||| ||||| || || || || |||||||| || || Sbjct 13880 CGGAGGACCAAATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCGGCCAATGTCCGACCA 13821 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || ||||| |||| || | | ||||||||| | || | || || ||| Sbjct 13820 TCCTCAAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGGATACCCTCCTTG 13761 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||| || ||| | | | | ||||||| |||||| || |||||||| ||| Sbjct 13760 TCTTGTATCTTCGCTTTGACATTATCAATGGTGTCTGAGCTTTCAACTTCCAAAGTGATT 13701 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || | |||||| || ||||||||||| Sbjct 13700 GTCTTTCCTGTAAGAGTTTTAACAAAGATCTGCAT 13666 >seq1750 Length=74028 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| || ||||| || | ||| |||||| || || || |||| Sbjct 61784 CATC-CCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAAT 61726 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | || |||| ||||| ||||| ||| |||| || | | ||||||||| | Sbjct 61725 CAGCAAGAGTACGACCATCCTCCAACTGTTTTCCGGCAAAGATCAGCCTCTGCTGATCTG 61666 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | ||||| ||||| ||||||| ||| | | | | ||| || | ||| | Sbjct 61665 GTGGGATTCCTTCCTTGTCCTGTATTTTTGCTTTGACATTATCGATTGTATCAGAGCTCT 61606 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | ||| || || || || || | |||||| || ||||||||||| Sbjct 61605 CGACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 61554 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||||||||| ||| ||||| ||||| || || || ||||| || || Sbjct 62224 CGGAGGACCAAATGCAAGGTGGACTCTTTCTGTATGTTGTAGTCAGCCAATGTTCGACCA 62165 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || || |||| || | | ||||||||| | || | ||||| ||| Sbjct 62164 TCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATACCTTCCTTG 62105 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| ||| | | | | |||||| | |||||| || |||||||| ||| Sbjct 62104 TCTTGTATTTTCGCTTTGACATTGTCAATTGTGTCAGAGCTTTCAACTTCCAAAGTGATT 62045 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || | |||||| || || |||||||| Sbjct 62044 GTCTTTCCTGTAAGAGTTTTAACAAATATCTGCAT 62010 >seq11477 Length=17588 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 |||||||||| ||| ||| || || || ||||||||||| | ||| | || || Sbjct 305 ACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTCCTCT 364 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || ||||| ||| | || || | | |||||| |||| ||| | |||||| ||||| Sbjct 365 AACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 424 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 || || || | | ||| ||||| | ||| ||||| |||| || || ||||| Sbjct 425 ATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTTTTT 484 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||||| |||||||||||||| Sbjct 485 CCGGTTAGGGTTTTCACGAAGATCTGCAT 513 >seq8957 Length=24100 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| || | || | |||| ||||| || ||||| || ||||| Sbjct 15734 GCCTCCGCGGAGTCGCAGAACGAGGTGAAGAGTGGACTCTTTCTGAATATTGTAGTCGGC 15793 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || | || |||||||| || ||| | || || || ||||||||||| | || Sbjct 15794 GAGAGTACGGCCGTCTTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGATCGGGCGG 15853 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || || || | ||| | | | ||||| | ||| |||| Sbjct 15854 GATGCCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCGGAGCTCTCCA 15912 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || || || || || | |||||| |||||||||||||| Sbjct 15913 CCTCCAACGTGATGGTCTTGCCGGTCAGAGTTTTCACGAAGATCTGCAT 15961 >seq16751 Length=10463 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||||||||| ||||| |||| || || ||||| ||||| |||||||| Sbjct 6293 CCACCACGCAAACGCAGCACCAAGTGCAGGGTTGACTCCTTTTGAATATTGTAATCGGCT 6352 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | | |||| ||||| || || || ||||||| | | ||| || || | || Sbjct 6353 AAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCTGGTGGG 6412 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || || ||||| || || |||| || ||| || || |||| || || | Sbjct 6413 ATACCCTCCTTGTCTTGGATCTTAGCTTTAACATTATCGATA--GTATCTGAACTCTCAA 6470 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||||||||||||||| || || || || || || || || ||||| Sbjct 6471 CCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTAACAAAAATTTGCAT 6519 >seq10846 Length=19378 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||| || | ||| ||| ||||| |||||||| ||||| | ||| || Sbjct 11516 CGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATTATAGTCGGCAAGGGTGCGACCA 11575 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || ||| |||| || || | ||||||||||| || | || || ||| Sbjct 11576 TCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTG 11635 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | ||||| | ||| || || ||||||||||| Sbjct 11636 TCTTGAATTTTGGCTTTGACGTTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTAATG 11695 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || || || || ||||| Sbjct 11696 GTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCAT 11730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346804042018037