Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq37323 280 6e-71 seq117163 152 2e-32 seq78026 141 4e-29 seq78025 140 1e-28 >seq37323 Length=3330 Score = 280 bits (310), Expect = 6e-71 Identities = 525/764 (69%), Gaps = 31/764 (4%) Strand=Plus/Minus Query 53686 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 53745 ||||||| ||||||| ||| |||| ||| ||||||| |||||||||||| | | | |||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 53746 CCACCTCGACCGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGAT 53805 | | ||| |||||| ||||||||||||| || || ||||| || ||| ||| Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782 Query 53806 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTAT-TGCCTCGCCAATGGGCTGCACGTGC 53864 ||| ||| ||||||| ||| |||||||| | | || | || | ||| | || ||| Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGTGGA-TCCAGCTGC 1723 Query 53865 CACACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTG 53924 | || || ||||| ||||| || ||||||||| |||||||||||||| ||| | Sbjct 1722 CCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCCG 1663 Query 53925 AATTACGTTGGGCGCAGCGGTTTGCG-TACTACAACCGCGCCGAAATGATGGACCGATTC 53983 || | || ||||||||||| || || | || ||||||| || ||||||||||| || Sbjct 1662 AACTGCGATGGGCGCAGCGCTTCGCCCTGCTG-AACCGCGAGGAGATGATGGACCGCGTC 1604 Query 53984 GAGC---AGGCGTTCCGCCAT-TGGGT-CGGCGCCGACCAGNNNNNNNNNNNNNNNNNNN 54038 | || ||| | | || | ||| ||||| | ||| Sbjct 1603 GTGCGCCAGGTCTCCGAGCACCTCGGTGCGGCGGTG--CAGGAGCGCGAGCGG------- 1553 Query 54039 NNACCATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGT 54098 |||||| |||||||||| ||||||| ||||||||||| || ||||||||| | Sbjct 1552 -----ATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTCT 1498 Query 54099 GGTTGACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCT 54158 || || |||| ||||| || ||| | ||| |||| | | |||||||| || || | Sbjct 1497 GGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGT 1438 Query 54159 CGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGA-GGCGTTGTGCTCG 54217 ||||||| ||| || || || ||| || ||| | || || |||| | |||| Sbjct 1437 CGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCGGATGGCGCTCGACTCG 1379 Query 54218 GCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCACGCAAGCTGTTCACGGTC 54277 |||||||||| || || ||| | | ||||| ||||||| || ||| ||||||| || Sbjct 1378 TCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACGATC 1319 Query 54278 GACGACCT---CGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTC 54334 || | || ||| ||| |||||||||||||||| ||| | |||||| | | Sbjct 1318 GAGCAGCTGCGCGAGGCG---ATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCCTG 1262 Query 54335 GATGAGATTCCCGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGCCGAAACGCTG 54394 || ||||| || | || ||||||||||||||| |||||| |||||| | ||| Sbjct 1261 GACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGACCTG 1202 Query 54395 GTGTCGGTGGATGCCGAGCTGCGCCAGCTCTTGAACGTCAAGGG 54438 || | ||| | ||||||||||| | ||||| ||||| Sbjct 1201 GTCACCGTGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158 Score = 116 bits (128), Expect = 1e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 53297 GCGAGCGAGGTCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCCGATC-TGCCTTT 53355 || |||| | |||| ||| ||||| | ||||||||||| | || ||| | |||| || Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCA-CGTCGACCATGCCCTT 2610 Query 53356 CGTTTATCCGCATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGG 53415 | | | ||||| |||| |||||||| || ||||| | || ||| || ||||| Sbjct 2609 CATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGG 2550 Query 53416 CACGGTGATCCCGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTG 53475 | ||||||||||||| ||||| ||||| ||||| || || || || || || ||||| Sbjct 2549 CTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTG 2490 Query 53476 CGGCATGATCGCAGCCCGCAC 53496 ||| |||||||| | |||||| Sbjct 2489 CGGGATGATCGCGGTCCGCAC 2469 >seq117163 Length=525 Score = 152 bits (168), Expect = 2e-32 Identities = 321/480 (67%), Gaps = 21/480 (4%) Strand=Plus/Plus Query 53696 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 53755 ||||| ||||| ||||| ||||| |||||||||||| | | | | ||| | ||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 53756 CGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCGCGCAGAAG 53815 || |||||| |||||| ||||| || || |||||||| ||| |||||||||| | Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 53816 CACATTCAGGCCGCGCAGG-GCTATTGCCTCGCCAATG--GGCTGCACGTGCCACACAAG 53872 ||||| ||| |||||||| || || | | || || | | | || ||| Sbjct 154 CACATCGAGGTCGCGCAGGCCCTGATGAC---GAAGTGGTGGATCGATCTCCCGCACCGC 210 Query 53873 GATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTACGT 53932 || || || ||||| || ||||| |||| ||||||||||| ||| ||| || | || Sbjct 211 GACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCGG 270 Query 53933 TGGGCGCAGCGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAG--G 53990 |||||||||||||| ||| |||||||| || ||||||||||| ||| | | | Sbjct 271 TGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCGTCCGGCAG 330 Query 53991 CGTTCCG-CCATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAAC 54049 | |||| || | || |||| | | |||||| Sbjct 331 CTCTCCGAGCACCTCGGCGAGGCCGTCGTGGAGCAGGAGCGG------------ATCAAC 378 Query 54050 GCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTTGACCCGT 54109 |||||||||||| ||||||| ||||||||||| || | | ||| ||| | | || Sbjct 379 ACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGTCTCGCGG 438 Query 54110 AAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACC 54169 ||||| |||||| ||| |||||| | | || ||||| || || |||||||||||| Sbjct 439 AAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGATGGGCACC 498 >seq78026 Length=538 Score = 141 bits (156), Expect = 4e-29 Identities = 238/342 (70%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 54044 ATCAACGCGCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTTG 54103 |||||| |||||||||||||| | ||||| |||| || | ||| ||| | Sbjct 55 ATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTC 114 Query 54104 ACCCGTAAGGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATG 54163 |||| ||||| ||||||||||||| || || || || ||||| || || |||||| Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174 Query 54164 GGCACCTGTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC-TCGGCGCC 54222 || | ||||| ||||| |||| |||||| || | ||| || | | || || Sbjct 175 GGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC-CC 233 Query 54223 GCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCACGCAAGCTGTTCACGGTCGACGA 54282 |||||| ||||| ||| || |||||| | ||| ||||||| ||||| ||||| Sbjct 234 GCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGA 293 Query 54283 CCTCGAAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGATGAGAT 54342 ||||| ||||| ||||| |||||||||| || | || |||| |||| || Sbjct 294 TCTCGACGCGCGCATGACCGGCATCGAGTGGGGCCGGTCGGACGCGTTCCTCGACGAACA 353 Query 54343 TCCCGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGC 54384 |||||||| |||||| |||||||| || ||| |||||| Sbjct 354 CCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGC 395 >seq78025 Length=530 Score = 140 bits (154), Expect = 1e-28 Identities = 198/276 (72%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 53686 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 53745 ||||||| |||||| || |||| || |||||| |||||||||||| | ||||||| Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315 Query 53746 CCACCTCGACCGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGAT 53805 | | |||||||| |||||| ||||||||||||| || ||||| || || || |||||| | Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375 Query 53806 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTGC-CTCGCCAATGGGCTGCACGTGC 53864 |||| |||||| ||| |||||||| | ||| | || | ||| || | ||| Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCGGTGGATCGC-CCTGC 434 Query 53865 CACACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTG 53924 | | ||| || || |||||||||||||| | ||||||| |||||||| | Sbjct 435 CGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGG 494 Query 53925 AATTACGTTGGGCGCAGCGGTTTGCGTACTACAACC 53960 | || ||||||||| ||| || | | ||||| Sbjct 495 CCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190289650688080