Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq37323 293 9e-75 seq117163 158 5e-34 seq78025 152 2e-32 seq78026 150 7e-32 seq116094 87.8 7e-13 >seq37323 Length=3330 Score = 293 bits (324), Expect = 9e-75 Identities = 498/713 (70%), Gaps = 37/713 (5%) Strand=Plus/Minus Query 54398 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 54457 ||||||| ||||||| ||| |||| ||| ||||||| |||||||||||| | | | |||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 54458 CCACCTCGACCGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGAT 54517 | | ||| ||||||| ||||||||||||| || || || || || ||| ||| Sbjct 1841 CGAGACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGAT 1782 Query 54518 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTA-TTGCCTCGCCAACGGGCTGCACGTGC 54576 ||| ||| ||||||| ||| |||||||| | | || | || | || | || ||| Sbjct 1781 CGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGC-TGTGGATCCAGCTGC 1723 Query 54577 CGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCG 54636 | || || ||||| ||||| || ||||||||| |||||||||||||| ||| || Sbjct 1722 CCGACCGCGACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCTACATCGCCG 1663 Query 54637 AACTGCGCTGGGCGCAGCGGTTCG-CGTACTACAACCGCGCCGAAATGATGGACCGATTC 54695 ||||||| ||||||||||| |||| | | || ||||||| || ||||||||||| || Sbjct 1662 AACTGCGATGGGCGCAGCGCTTCGCCCTGCT-GAACCGCGAGGAGATGATGGACCGCGTC 1604 Query 54696 GAG---CAGGCGTTCAGGCA--TTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNN 54750 | | |||| | | ||| | || ||||| | ||| Sbjct 1603 GTGCGCCAGGTCTCCGAGCACCTCGGTGCGGCG--GTGCAGGAGCGCGAGCGG------- 1553 Query 54751 NNACCATCAACGCGCACCACAACTACACGCAAAAGGAGCGGCACGGCGACCGTGATGTGT 54810 |||||| |||||||||| |||||| ||||||||||| || |||||| || | Sbjct 1552 -----ATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGACGTCT 1498 Query 54811 GGCTGACCCGTAAGGGGGCGATCGACGCGAACGCC--GGTGTGCGGGGCCTGATTCCGGG 54868 ||||| |||| ||||| || ||| | ||| || | || | | |||||||| || || Sbjct 1497 GGCTGTCCCGCAAGGGCGCCATCCAGGCG--CGTCAGGGCGACCTCGGCCTGATCCCCGG 1440 Query 54869 CTCGATGGGCACCTGTTCGTATGTCGT-GACCGGCAAGGGTAATCCCGA-GGCGTTGTGC 54926 |||||||| ||| || || || || || ||| || | || || |||| | | Sbjct 1439 GTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA--CCGGATGGCGCTCGAC 1382 Query 54927 TCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACG 54986 ||| |||||||||| || || ||| | | ||||| |||||||||| ||| ||||||| Sbjct 1381 TCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCACG 1322 Query 54987 GTCGACGACCT---CGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCGAGGCGTGG 55043 |||| | || ||||||| ||| |||||||||||| ||| | |||||| | Sbjct 1321 ATCGAGCAGCTGCGCGAGGCG---ATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTC 1265 Query 55044 GTCGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGC 55096 | |||||||| || | || ||||||||||||||| |||||| |||||| Sbjct 1264 CTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGC 1212 >seq117163 Length=525 Score = 158 bits (174), Expect = 5e-34 Identities = 209/287 (73%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 54408 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 54467 ||||| ||||| ||||| ||||| |||||||||||| | | | | ||| | ||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 54468 CGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCGCGCAGAAG 54527 ||||||||| |||||| ||||| || || || ||||| ||| |||||||||| | Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 54528 CACATTCAGGCCGCGCAGGGCTATTGCCTCGCCAACGGGCTGCACG---TGCCGCACAAG 54584 ||||| ||| |||||||| | || | | || || | || | |||||| Sbjct 154 CACATCGAGGTCGCGCAGGCCC--TGA-TGACGAAGTGGTGGATCGATCTCCCGCACCGC 210 Query 54585 GATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAACTGCGC 54644 || || || ||||| || ||||| |||| ||||||||||| ||| ||| ||| ||||| Sbjct 211 GACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCGG 270 Query 54645 TGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAAATGATGGACCG 54691 |||||||||||||||||| |||||||| || ||||||||||| Sbjct 271 TGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCG 317 >seq78025 Length=530 Score = 152 bits (168), Expect = 2e-32 Identities = 201/276 (73%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 54398 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 54457 ||||||| |||||| || |||| || |||||| |||||||||||| | ||||||| Sbjct 256 GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGA 315 Query 54458 CCACCTCGACCGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGAT 54517 | | ||||||||||||||| ||||||||||||| || || || || || || |||||| | Sbjct 316 CGAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCT 375 Query 54518 CGCGCAGAAGCACATTCAGGCCGCGCAGGGCTATTGC-CTCGCCAACGGGCTGCACGTGC 54576 |||| |||||| ||| |||||||| | ||| | || | || || | ||| Sbjct 376 CGCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCGGTGGATCGC-CCTGC 434 Query 54577 CGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCG 54636 || | ||| || || |||||||||||||| | ||||||| |||||||| | Sbjct 435 CGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGG 494 Query 54637 AACTGCGCTGGGCGCAGCGGTTCGCGTACTACAACC 54672 ||||| ||||||||| |||||| | | ||||| Sbjct 495 CCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530 >seq78026 Length=538 Score = 150 bits (166), Expect = 7e-32 Identities = 240/342 (70%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 54756 ATCAACGCGCACCACAACTACACGCAAAAGGAGCGGCACGGCGACCGTGATGTGTGGCTG 54815 |||||| |||||||||||||| ||||| |||| || | || ||||| Sbjct 55 ATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCGTCTGGCTC 114 Query 54816 ACCCGTAAGGGGGCGATCGACGCGAACGCCGGTGTGCGGGGCCTGATTCCGGGCTCGATG 54875 |||| ||||||||||||||||||| |||||| || || ||||| || || |||||| Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174 Query 54876 GGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGC-TCGGCGCC 54934 || | ||||| ||||| |||| ||| || || | ||| || | | || || Sbjct 175 GGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC-CC 233 Query 54935 GCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGA 54994 |||||| ||||| ||| || |||||| | ||||||||||| ||||| ||||| Sbjct 234 GCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGA 293 Query 54995 CCTCGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGAT 55054 ||||| ||||| ||| | |||||||||| || | || |||| ||||||| Sbjct 294 TCTCGACGCGCGCATGACCGGCATCGAGTGGGGCCGGTCGGACGCGTTCCTCGACGAACA 353 Query 55055 TCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGC 55096 |||||||| |||||| |||||||| || ||| |||||| Sbjct 354 CCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGC 395 >seq116094 Length=536 Score = 87.8 bits (96), Expect = 7e-13 Identities = 134/186 (72%), Gaps = 5/186 (3%) Strand=Plus/Plus Query 37631 TGTGTGCGCAGACCGACCCCGAAATCTTCTTTCCAGAGCAGGGCGGCAGCACCCGCGAGG 37690 |||| || |||||||||||||| ||||| || ||| |||||||| |||||||||| Sbjct 38 TGTGCGCCCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCGACCCGCGAGG 97 Query 37691 CCAAGCGCATTTGCGGCGGCTGCCAGGTGTCCGACGAGTGCCTTACGTGGGCGCTGAGTC 37750 |||||||| | ||| |||| |||| | | |||||||| || |||||| | | Sbjct 98 CCAAGCGCGTCTGCCAGTCCTGCGAGGTCCGCCAGGAGTGCCTGGAGTACGCGCTG-GGC 156 Query 37751 AGCCCGTCAACCCGACGGGCATTTGGGGCGG-CACTACCGAACGAGCACGGCGACGGATC 37809 | || | | | | ||||| |||||||| | || ||||||| | ||| || || || Sbjct 157 A--ACGACGAGCGGTTCGGCATCTGGGGCGGTCTCT-CCGAACGCGAACGTCGCCGCCTC 213 Query 37810 AAGCGC 37815 |||||| Sbjct 214 AAGCGC 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190928635411680