Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq57685 297 2e-75 seq1930 145 9e-30 seq78534 131 2e-25 seq99200 118 1e-21 seq11270 104 3e-17 seq35533 100 4e-16 seq2373 96.9 4e-15 >seq57685 Length=1792 Score = 297 bits (328), Expect = 2e-75 Identities = 918/1397 (66%), Gaps = 39/1397 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| | ||| ||||||| ||||| | || || ||||| || ||||| || ||| Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | ||||| ||| |||| ||||| | || || ||||| Sbjct 1730 ATCGAGACCTACAACTACATGTCAAACAAGTAC-TTCACGCACGCTTCGCCGACACTCTT 1672 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 || |||||||| || | || || || || || ||||| || | ||||||||| Sbjct 1671 CAGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGGA 1612 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAA--ATCTCAAAGTGGGCT 111848 ||| | || || |||| || |||| | ||| ||| ||||| ||| ||| Sbjct 1611 CAGCATCGAGGGTATCTACGATACACTCAAG--ACCTGCGCAATGATCTCGAAGAATGCT 1554 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTA 111906 || || |||||| | || | || || | || | | || ||||| || | || | Sbjct 1553 GGCGGCATCGGGTTCAACGTTCACCGCATCCGTGCGA-CTGGT-TCGTACATTGGCGGCA 1496 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 | ||||| ||| ||||| | | ||||||||||| || || ||| || || || | Sbjct 1495 CCAATGGCACATCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTT 1436 Query 111967 ATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| |||||| ||| ||||| | || | | || | || || ||||||| Sbjct 1435 ATGTCGACCAAGGTGGCAACAAGCGTCCC---GGCGCCTTTGCCATGTACCTCGAGCCAT 1379 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGC 112080 ||||||| ||| || | | ||||| || | || ||||| || | ||||||| | Sbjct 1378 GGCACGCTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGGTCC 1319 Query 112081 GGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 | ||| || || ||||||| || ||||||||||| ||||| ||||||||| | || ||| Sbjct 1318 G-TGCTCGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGAG 1260 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| ||||| | || | || || || || || ||||| | || | | Sbjct 1259 CAGAATGGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTAT 1200 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 || || ||||| || || ||||||| ||||||||| | || |||| | || ||| Sbjct 1199 GGCGATGAGTTCGAGGCTCTCTACAACAAGTACGAGAAGGAGGGTCGTGGTCGTGAGACC 1140 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || | || | || | | ||| | || || ||| || |||| || |||||||| | || Sbjct 1139 GTTCGCGC-ACAGAAGCTATGGTACGCCATCCTCGAGGCTCAGACAGAGACTGGCAATCC 1081 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||||| |||||||| || || |||| || || ||||| ||||| | ||||| || Sbjct 1080 TTTCATGCTCTACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAGAACCTCGGTGTCAT 1021 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 || ||||| ||||| ||||| ||| | || | ||| | |||||| ||||| Sbjct 1020 TCGCAGCTCCAATCTCTGCACAGAGATCATTGAGTATACTGCTCCTGATGAGGTTGCTGT 961 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA--AGACATTT 112496 || ||| | || || | || || || | ||||| || || | ||| || | || Sbjct 960 TTGCAACTTGGCTTCTCTGGCACTTCCTACCTATGTCGA--CATGGCCAACGAGTCTTTC 903 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | |||| ||||| ||||| | ||| || ||||| |||| | || Sbjct 902 GACTTCCAAAAGCTCCATGAAGTCGTTCAGGTCGTCGTCAAGAACCTGAACAAGATCATC 843 Query 112557 GATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 112613 | | ||| || || || |||| ||||| || || |||||| | ||||| || Sbjct 842 AACATCAATCACTATCCAGTGCCTGAG---GCTCGCAAGTCCAATATGCGTCACCGCCCT 786 Query 112614 ATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGA 112672 || ||||| ||||| |||||||||||||||| |||| | || || ||| |||| || Sbjct 785 ATCGGTCTTGGTGTGCAAGGTCTCGCGGATGCATTCTTGGCTCTG-CGCATGCCATTCGA 727 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || || || || |||| | || || ||||| || || ||||| ||||| Sbjct 726 CTCTCCAGAGGCTCGTCAACTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCT 667 Query 112733 TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 || | || ||||| | | |||||| || || |||| ||||| ||||| Sbjct 666 CACTGCCTCGTGCGATTTGGCCAAAGAACTTGGTCCTTACGAGACCTACGAGGGCTCTCC 607 Query 112793 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTAC 112850 | ||| ||||| | |||||||| || ||||||| |||| || | || | || Sbjct 606 TGTTTCGCAAGGCGAGCTTCAATACGACATGTGGG-GTGTGACTCCCA-CTGACCTCTGG 549 Query 112851 GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATG 112910 |||||| |||||||||||| ||| || | || | || || |||| | | Sbjct 548 GACTGGAACGCTCTCAAGGCTAAGATCGCTGACCACGGCGTCCGAAATTCTCTTCTTGTC 489 Query 112911 GCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCC 112970 ||||| ||||| || ||||| || | || ||| |||| || || ||||| || || Sbjct 488 GCACCTATGCCGACTGCCTCGACATCGCAGATCATGGGCTTCAACGAGTGCTTCGAGCCA 429 Query 112971 TACACGACGAACATCTA 112987 ||||| | ||||| || Sbjct 428 TACACTTCCAACATTTA 412 >seq1930 Length=68304 Score = 145 bits (160), Expect = 9e-30 Identities = 291/423 (69%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 || || || ||| | | || ||||| || || |||| || || |||| | || ||| Sbjct 60272 TCGAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTT--CAA 60215 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| ||||||||||||||||||| || ||||| | |||||||||| || Sbjct 60214 AACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---C 60158 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| |||| | | |||| ||| || |||||||| ||||||| || || |||| Sbjct 60157 CACCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGC 60098 Query 16093 ATGGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||| || | | ||| ||| ||||| || || || ||| || |||||| Sbjct 60097 AAGGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGGACTCGAGAGGCACCAACACCA 60039 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 || |||||||| ||||| | || | | | || | || || || ||| || |||||| Sbjct 60038 ACGAACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAACGGAACACCAGCTTCACC 59980 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || ||| || |||||||| || || || || ||| || || | || Sbjct 59979 AGCAATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCC 59920 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | |||||| || ||| || || | | || ||||| | ||| ||||| ||||| | Sbjct 59919 TTTTGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCACTAC 59860 Query 16331 CTC 16333 ||| Sbjct 59859 CTC 59857 >seq78534 Length=1057 Score = 131 bits (144), Expect = 2e-25 Identities = 541/840 (64%), Gaps = 24/840 (3%) Strand=Plus/Plus Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 |||| | || ||||||||||||||||| ||| | | |||| || | ||| | | Sbjct 198 TCGCCATTTACCTTGAGCCATGGCACGCTGATGTATTCGAGTGGCTCAACTTGAGAAAGA 257 Query 112060 ACCAAGGTGATGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 |||| || | || || | | | ||| | |||||||||| ||||||||||||||| || Sbjct 258 ACCACGGCAAAGAAGAAGT-CAGAGCCAGAGATCTCTTCTACGCTCTCTGGATTCCTGAC 316 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 112178 || ||||||||| |||| || ||| || | ||| | || | ||||| ||| | | Sbjct 317 CTATTCATGAAGCGAGTAGAAAAGAATGCAGACTGGACACTGATGTGTCC---CAATGAA 373 Query 112179 ---CCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || ||| | || || | || || || || || ||| | | ||| || || ||| Sbjct 374 TGTCCTGGTTTGTCTGACTGCTACGGCGACGAATTCGAGGCCTTGTTCACCAAATATGAG 433 Query 112236 GAAG----AAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT 112291 | | |||| || || | | || | ||| | ||||| | || || | Sbjct 434 AAGGCAGGAAAG--GGCCGCCAG--ACAATTAAGGCTCAGAAACTGTGGTATGCCATCAT 489 Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 || |||| || |||||||| | |||| ||||| |||||||| ||||| |||| || Sbjct 490 TGAGGCTCAGACTGAGACTGGCAATCCATTCATGCTGTACAAAGATGCCTGCAACCGCAA 549 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| || |||||||| |||| ||||||| ||||||||||| || |||||| | || Sbjct 550 GAGCAACCAAAAGAACCTGGGAACGATCAAGTCATCCAACCTCTGCACCGAAATCATTGA 609 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 | ||| | |||||| || || || || ||||| || || | || || || | Sbjct 610 GTATACTGCTCCAGATGAAGTCGCAGTTTGCAATCTCGCGTCTGTCTCACTGCC--AGCA 667 Query 112472 TGTG-GATCCAGAGACAAAGACATTT--GATTATGAAAAACTCCACGAAGTTACGAAAAC 112528 | || | |||| | | ||| || | |||| | | | | || | || | || Sbjct 668 TTTGTCAACCAG-GCCGAAGGAATCTACGATTTTCAGGGATTGCATAATGTCATCAAGGT 726 Query 112529 TGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCG 112588 | ||| ||| | |||| |||| | | || || || || || || || Sbjct 727 CATGACACGCAACTTGAACAAGATTATCAACATCAACTTCTATCCTGTGCCCGAAGCACG 786 Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648 || || |||||||| ||||| ||||| || ||||| |||||| | || |||| ||| Sbjct 787 AAAGAGCAACATGAGACATCGTCCCATTGGCCTGGGTGTACAAGGTTTGGCTGATGCATT 846 Query 112649 CAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATAT 112707 ||| ||||| || |||||||| | |||||| | | |||| | || | Sbjct 847 CATGGCTTTG-CGAATGCCATTTGATAGCCCCGAAGCCAGACAGCTCAACATCCAGATCT 905 Query 112708 TTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTC 112767 ||||||| | || ||||| || || ||| | || | ||| ||| ||||| Sbjct 906 TTGAGACTGTCTACCACGCTGCGCTGACTGCGTCATGCGAAATTGCAAAGGAGCTTGGTC 965 Query 112768 CATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 | || || || | | || || || | |||||||| |||||| | ||| ||||||| Sbjct 966 CTTACGAGACTTACCAAGGCTCGCCTGTCTCACAAGGTCAGCTTCAGTATGACATGTGGG 1025 >seq99200 Length=725 Score = 118 bits (130), Expect = 1e-21 Identities = 182/258 (71%), Gaps = 10/258 (4%) Strand=Plus/Minus Query 102079 AGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATT 102138 |||| || | ||||| || || ||| | || ||||||| || | ||||| || || | Sbjct 469 AGAAACAGTACCTCTTCGATGCTATCGACACTATTCCATGCATCCGCAAGAAGGCTGAGT 410 Query 102139 GGGCTATGAAGTGGTT---TGATAC--AAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGC 102193 |||| ||| ||| | ||||| |||| | || || | || || | || Sbjct 409 GGGCGTTGAGATGGATCTCTGATAAGGAAAGCAGT-----TTCGCCCAACGTCTGGTGGC 355 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 ||| || |||||||| ||||||||||| || || ||| | | |||| |||||||| Sbjct 354 ATTCGCCGCCGTTGAGGGCATCTTCTTCTCCGGGTCTTTCGCCTCCATTTTCTGGCTCAA 295 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 |||| ||||||||||||| ||||| |||||||||||||| ||||||||||| || || Sbjct 294 GAAGAGAGGTCTCATGCCTGGTCTGACATTCTCCAACGAGCTGATCTCTCGTGATGAAGG 235 Query 102314 ACTCCACCAAGAGTTTGC 102331 | ||| ||| || || Sbjct 234 TATGCACACAGATTTCGC 217 >seq11270 Length=18388 Score = 104 bits (114), Expect = 3e-17 Identities = 181/262 (69%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 ||||| ||||| || |||||||| | ||| || | || || | || ||||| || Sbjct 5759 TATATCAAGGACTCGGCCGAGAAGAACCGGCTGTTCCACGCGATGGAGACCGTTCCTTGC 5700 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATA-CAAAGTCGCGTTCCTTTGC 102178 | ||||| || || ||||| || |||| | || | || ||||| || Sbjct 5699 GTGGCGAAGAAGGCCGAGTGGGCCCTGCGGTGGATCGACGGCGGAGAATCGTTC----GC 5644 Query 102179 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 102238 ||| | ||| |||| || || || || || || || |||||||| ||| ||||||||| Sbjct 5643 CGAGAGGCTCATCGCTTTCGCCTGCGTCGAAGGCATTTTCTTCTCCGGTAGCTTCTGCGC 5584 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | |||||| || ||||| || | ||||| || | ||||||||||||| | || Sbjct 5583 GATATTTTGGCTAAAAAAGCGCGGGTTAATGCCCGGGTTAACCTTCTCCAACGAGTTGAT 5524 Query 102299 CTCTCGTGACGAGGGACTCCAC 102320 ||| || ||||| || |||||| Sbjct 5523 CTCGCGAGACGAAGGCCTCCAC 5502 >seq35533 Length=2598 Score = 100 bits (110), Expect = 4e-16 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 |||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||| Sbjct 2595 TGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTCACCTTCTCCAACGAGCTCATCTCTCGT 2536 Query 102306 GACGAGGG 102313 |||||||| Sbjct 2535 GACGAGGG 2528 >seq2373 Length=61655 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/130 (77%), Gaps = 12/130 (9%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||||||||| ||||| ||||||||||| |||| ||||||||| | Sbjct 23220 AAATCCATCCATCTCTGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 23276 Query 16034 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 16087 ||| || ||| ||| | ||| | ||||| ||||||||||||||||| || || Sbjct 23277 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 23333 Query 16088 GATGCATGGT 16097 ||||| ||| Sbjct 23334 AATGCAGGGT 23343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619705845544080