Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq57685 288 1e-72
seq1930 129 7e-25
seq78534 125 8e-24
seq2373 93.3 5e-14
seq64904 87.8 2e-12
>seq57685
Length=1792
Score = 288 bits (318), Expect = 1e-72
Identities = 1120/1734 (65%), Gaps = 41/1734 (2%)
Strand=Plus/Plus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
|||||||||||||| || ||||||||||| ||||||| | | |||||| |||| |
Sbjct 67 CGGAGATAGTACATGCCAGTCTTGAGTCCGAGTTTCCAACCAGCGAAATGCATTGAAGTG 126
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| |||| ||| || || | |||| || || | ||| || || || |||
Sbjct 127 ATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTGAGCGACTGAGATTGATCGATAAAG 186
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGG 105769
|||||| | || ||||| | || || | | |||| ||||| || || |
Sbjct 187 GCACCACGATCGGCAGCCATCTGAACGATTTGTCGCTGGCTGATCTCCCAGACAGTCTTG 246
Query 105770 TAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTG 105829
|||||| ||||| ||||| || || | | ||| ||||| || || | | |
Sbjct 247 TAGAGAGCCTTGAGGTCATCGGGAATGTTAGGGATGCGCTGAATGGATCCGCTGTCGGCG 306
Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCA--ATCTTCTTGAGATCATTGACGA 105887
| ||| ||| |||||| | | ||||| |||||| ||| | |||||| |||| |
Sbjct 307 ATGATGCGATTCTTCATGTTGTCAGACCAGAGACCACGATCAAC--GAGATCCTTGAGAA 364
Query 105888 GATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGTC 105946
| |||||| | | ||||| || || | | | | ||| || ||||| |
Sbjct 365 GCCAAGGGTTGACGACCTGGAACTCGCCGGCCAAGACACGACG-AGAGTAAATGTTGGAA 423
Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006
||||| || || ||||| || || |||| ||| || | || ||||| || |||||
Sbjct 424 GTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTCGAGGCAGTCGGCATA 483
Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066
||||| | | |||| || || | || | || ||| |||||||| | | |
Sbjct 484 GGTGCGACAAGAAGAGAATTTCGGACGCCGTGGTCAGCGATCTTAGCCTTGAGAGCGTTC 543
Query 106067 CAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124
||||| || | || | || |||| ||||||| || |||||||| | ||||| |
Sbjct 544 CAGTCCCAGAGGTCAG-TGGGAGTCACAC-CCCACATGTCGTATTGAAGCTCGCCTTGCG 601
Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 106184
| ||||| ||||| | ||||| || | ||| | ||| ||||| || || |
Sbjct 602 AAACAGGAGAGCCCTCGTAGGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGAGG 661
Query 106185 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244
| || | ||||| || ||||| || ||||| | || | | || ||
Sbjct 662 CAGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGTTGACGAGCCTCTG 721
Query 106245 CTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCAAA 106303
|| || |||| ||| || | | ||| |||||||||||||||| ||||| | |
Sbjct 722 GAGAGTCGAATGGCATGCG-CAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAAGA 780
Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTT 106360
|| ||||| | ||| |||||||| ||||| || || |||| || ||||| |||
Sbjct 781 CCGATAGGGCGGTGACGCATATTGGACTTGCGAGC---CTCAGGCACTGGATAGTGATTG 837
Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420
||| |||| ||| || || ||| || | || || |||||| || ||||
Sbjct 838 ATGTTGATGATCTTGTTCAGGTTCTTGACGACGACCTGAACGACTTCATGGAGCTTTTGG 897
Query 106421 TAATCAAAAGTGCGAGTCTCTTCATT--GACATACTTTGGAAGGGCGATTGATGCCAAAT 106478
| || |||| | || | ||| |||||| | ||||| || | || ||||| |
Sbjct 898 AAGTCGAAAGA-CTCGT-TGGCCATGTCGACATAGGTAGGAAGTGCCAGAGAAGCCAAGT 955
Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538
|||||||||| |||||| | | || ||||| | || ||||| || | ||||| |
Sbjct 956 TGCAAACAGCAACCTCATCAGGAGCAGTATACTCAATGATCTCTGTGCAGAGATTGGAGC 1015
Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598
| ||| || | ||||| || || || || |||||| ||||| ||||||||||
Sbjct 1016 TGCGAATGACACCGAGGTTCTTCTGATTGCTTTTGCGGTTGCAAGCATCTTTGTAGAGCA 1075
Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657
|| | || | || ||||| ||||| | || ||| || || | ||| | | || | ||
Sbjct 1076 TGAAAGGATTGCCAGTCTCTGTCTGAGCCTCGAGGATGGCGTACCATAGCTTCTG-TGCG 1134
Query 106658 GGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 106717
| || | | | || |||||| ||||||||| ||||||| || || |||||
Sbjct 1135 CGAACGGTCTCACGACCACGACCCTCCTTCTCGTACTTGTTGTAGAGAGCCTCGAACTCA 1194
Query 106718 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777
|| || |||| | ||||| || || || || || | || | ||| | |||
Sbjct 1195 TCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCA 1254
Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837
|| ||| || |||||||||||||| || |||||||| || | | ||||| || | |
Sbjct 1255 TTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGCATAGAAGAGGTCACGA 1314
Query 106838 -CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896
||| || |||| || | || ||||| || | || ||||| | | || ||| ||
Sbjct 1315 GCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGC 1373
Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATT 106950
|||||||||||| || || | || | | || ||||| ||| |||| |
Sbjct 1374 GTGCCATGGCTCGAGGTACATGGCAAAGGCGCC---GGGACGCTTGTTGCCACCTTGGTC 1430
Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010
||||| || || || ||| || || ||||||||||| | | ||||| ||| ||
Sbjct 1431 GACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGATGTGCC 1490
Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070
||| || || | ||| || | | || | | || | || | ||| || ||
Sbjct 1491 ATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTGAACCCGATGCC 1550
Query 107071 CCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128
||||| ||| ||||| ||||| || | | || || | |||||||| | |||
Sbjct 1551 GCCAGCATTCTTCGAGATCATTGCG--CAGGTCTTGAGTGTATCGTAGATACCCTCGATG 1608
Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188
|||||||||| | |||| |||||||| || || ||| || | || |||||||||
Sbjct 1609 CTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCA 1668
Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 107247
||||||| || || | ||||| |||| ||| | | ||||| | || ||| |||||
Sbjct 1669 CTGAAGAGTGTCGGCGAAGCGTGCGTGAA-GTACTTGTTTGACATGTAGTTGTAGGTCTC 1727
Query 107248 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301
| | ||| || || || || || || ||||| | ||| |||||||| | |||
Sbjct 1728 GATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCAT 1781
>seq1930
Length=68304
Score = 129 bits (142), Expect = 7e-25
Identities = 283/420 (67%), Gaps = 8/420 (2%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
|| || || ||| | | || || || || || |||| || || || | | ||||||
Sbjct 60272 TCGAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTTCAAAA 60213
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
|||||||| ||||||||||| ||||||| || ||||| | |||||||||| || |
Sbjct 60212 CCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---CCA 60156
Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401
||| |||| | | |||| ||| || |||||||| ||||||| || ||||| ||
Sbjct 60155 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 60096
Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461
|| ||| || || | | || ||||| || || | ||| || ||||||||
Sbjct 60095 GGAGCATTCTCCTTTGCCTTCTTGAAAAGATCACGGACTCGAGAGGCACCAACACCAACG 60036
Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520
|||||||| ||||| | || | | | || | || || || ||| || |||||| ||
Sbjct 60035 AACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAACGGAACACCAGCTTCACCAGC 59977
Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580
||| || ||| || |||||||| || || || || ||| || || | ||
Sbjct 59976 AATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCCTTT 59917
Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
|||||| || ||| || || | | || ||||| | ||| ||||| ||||| | |||
Sbjct 59916 TGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCACTACCTC 59857
>seq78534
Length=1057
Score = 125 bits (138), Expect = 8e-24
Identities = 325/485 (67%), Gaps = 14/485 (3%)
Strand=Plus/Minus
Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504
|||||| | ||| || | || || || | ||||||||| || ||||| | |
Sbjct 675 TTGACAAATGCTGGCAGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCA 616
Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564
|| ||||| | ||||| || || | |||||| ||| ||||| |||| |||||||||
Sbjct 615 GTATACTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGG 556
Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624
|| ||||| |||||| ||||| ||||| |||||| | || | || ||||| |||||
Sbjct 555 TTGCTCTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGA 496
Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCT 106682
| || | || || | ||||| || | | || || | || | | ||||| | |||
Sbjct 495 GCCTCAATGATGGCATACCACAGTTTCTGAGCCT--TA-ATTGTCTGGCGGCCCTTTCCT 439
Query 106683 -CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 106741
|| ||| || || ||| | | ||| || || || || || ||| || | |||
Sbjct 438 GCCTTCTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCA 379
Query 106742 GG---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798
|| | | ||| ||||| | || | ||| | || || || || |||||||||
Sbjct 378 GGACATTCATTG---GGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATG 322
Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACC 106857
|| ||||| |||||||| || | | ||||||||||| | | || | ||||| | ||
Sbjct 321 AATAGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGA-CTTCTTCTTTGCC 263
Query 106858 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917
||||| || || | || |||| | | ||| ||||||||||||||||| || |
Sbjct 262 GTGGTTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAAT 203
Query 106918 TGCGA 106922
||||
Sbjct 202 GGCGA 198
>seq2373
Length=61655
Score = 93.3 bits (102), Expect = 5e-14
Identities = 99/130 (76%), Gaps = 12/130 (9%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||||||||| || || ||||||||||| |||| ||||||||| |
Sbjct 23220 AAATCCATCCATCTCTGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 23276
Query 9341 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394
||| || ||| ||| | ||| | ||||| ||||||||||||||||| || ||
Sbjct 23277 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 23333
Query 9395 AATACATGGT 9404
||| || |||
Sbjct 23334 AATGCAGGGT 23343
>seq64904
Length=1455
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 155043 GTATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGC 155102
||||||||| | |||||| |||| ||||||||| || ||| | || | |||||
Sbjct 802 GTATGGTCGCATCGCACCAAGATCAGGTCTCGCTTCCAAACATTTTCTTGATACAGGTGC 861
Query 155103 GGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAA 155153
|||||| || ||| | ||||||| ||||||||||||||| |||| |||||
Sbjct 862 GGGTGTCATAGATGCTGACTATAGAGGTGAAGTCAAAGTGCTTCTTTTCAA 912
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588995613186360
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