Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq57685 288 1e-72 seq1930 129 7e-25 seq78534 125 8e-24 seq2373 93.3 5e-14 seq64904 87.8 2e-12 >seq57685 Length=1792 Score = 288 bits (318), Expect = 1e-72 Identities = 1120/1734 (65%), Gaps = 41/1734 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 |||||||||||||| || ||||||||||| ||||||| | | |||||| |||| | Sbjct 67 CGGAGATAGTACATGCCAGTCTTGAGTCCGAGTTTCCAACCAGCGAAATGCATTGAAGTG 126 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || | |||| || || | ||| || || || ||| Sbjct 127 ATCTTGCCCATGGTCGGCTCCTTCATGTGAATGTTGAGCGACTGAGATTGATCGATAAAG 186 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGG 105769 |||||| | || ||||| | || || | | |||| ||||| || || | Sbjct 187 GCACCACGATCGGCAGCCATCTGAACGATTTGTCGCTGGCTGATCTCCCAGACAGTCTTG 246 Query 105770 TAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTG 105829 |||||| ||||| ||||| || || | | ||| ||||| || || | | | Sbjct 247 TAGAGAGCCTTGAGGTCATCGGGAATGTTAGGGATGCGCTGAATGGATCCGCTGTCGGCG 306 Query 105830 ACCATGAGATCCTTCATATCCTTGGACCAAAGACCA--ATCTTCTTGAGATCATTGACGA 105887 | ||| ||| |||||| | | ||||| |||||| ||| | |||||| |||| | Sbjct 307 ATGATGCGATTCTTCATGTTGTCAGACCAGAGACCACGATCAAC--GAGATCCTTGAGAA 364 Query 105888 GATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCGTC 105946 | |||||| | | ||||| || || | | | | ||| || ||||| | Sbjct 365 GCCAAGGGTTGACGACCTGGAACTCGCCGGCCAAGACACGACG-AGAGTAAATGTTGGAA 423 Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| || || ||||| || || |||| ||| || | || ||||| || ||||| Sbjct 424 GTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGATGTCGAGGCAGTCGGCATA 483 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 ||||| | | |||| || || | || | || ||| |||||||| | | | Sbjct 484 GGTGCGACAAGAAGAGAATTTCGGACGCCGTGGTCAGCGATCTTAGCCTTGAGAGCGTTC 543 Query 106067 CAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124 ||||| || | || | || |||| ||||||| || |||||||| | ||||| | Sbjct 544 CAGTCCCAGAGGTCAG-TGGGAGTCACAC-CCCACATGTCGTATTGAAGCTCGCCTTGCG 601 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 106184 | ||||| ||||| | ||||| || | ||| | ||| ||||| || || | Sbjct 602 AAACAGGAGAGCCCTCGTAGGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGAGG 661 Query 106185 CCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCAT 106244 | || | ||||| || ||||| || ||||| | || | | || || Sbjct 662 CAGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGTTGACGAGCCTCTG 721 Query 106245 CTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCAAA 106303 || || |||| ||| || | | ||| |||||||||||||||| ||||| | | Sbjct 722 GAGAGTCGAATGGCATGCG-CAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAAGA 780 Query 106304 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTT 106360 || ||||| | ||| |||||||| ||||| || || |||| || ||||| ||| Sbjct 781 CCGATAGGGCGGTGACGCATATTGGACTTGCGAGC---CTCAGGCACTGGATAGTGATTG 837 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 ||| |||| ||| || || ||| || | || || |||||| || |||| Sbjct 838 ATGTTGATGATCTTGTTCAGGTTCTTGACGACGACCTGAACGACTTCATGGAGCTTTTGG 897 Query 106421 TAATCAAAAGTGCGAGTCTCTTCATT--GACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 | || |||| | || | ||| |||||| | ||||| || | || ||||| | Sbjct 898 AAGTCGAAAGA-CTCGT-TGGCCATGTCGACATAGGTAGGAAGTGCCAGAGAAGCCAAGT 955 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 |||||||||| |||||| | | || ||||| | || ||||| || | ||||| | Sbjct 956 TGCAAACAGCAACCTCATCAGGAGCAGTATACTCAATGATCTCTGTGCAGAGATTGGAGC 1015 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCA 106598 | ||| || | ||||| || || || || |||||| ||||| |||||||||| Sbjct 1016 TGCGAATGACACCGAGGTTCTTCTGATTGCTTTTGCGGTTGCAAGCATCTTTGTAGAGCA 1075 Query 106599 TGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCT 106657 || | || | || ||||| ||||| | || ||| || || | ||| | | || | || Sbjct 1076 TGAAAGGATTGCCAGTCTCTGTCTGAGCCTCGAGGATGGCGTACCATAGCTTCTG-TGCG 1134 Query 106658 GGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCC 106717 | || | | | || |||||| ||||||||| ||||||| || || ||||| Sbjct 1135 CGAACGGTCTCACGACCACGACCCTCCTTCTCGTACTTGTTGTAGAGAGCCTCGAACTCA 1194 Query 106718 TCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCA 106777 || || |||| | ||||| || || || || || | || | ||| | ||| Sbjct 1195 TCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCA 1254 Query 106778 CCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA 106837 || ||| || |||||||||||||| || |||||||| || | | ||||| || | | Sbjct 1255 TTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGCATAGAAGAGGTCACGA 1314 Query 106838 -CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGC 106896 ||| || |||| || | || ||||| || | || ||||| | | || ||| || Sbjct 1315 GCACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGC 1373 Query 106897 GTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATT 106950 |||||||||||| || || | || | | || ||||| ||| |||| | Sbjct 1374 GTGCCATGGCTCGAGGTACATGGCAAAGGCGCC---GGGACGCTTGTTGCCACCTTGGTC 1430 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 ||||| || || || ||| || || ||||||||||| | | ||||| ||| || Sbjct 1431 GACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGATGTGCC 1490 Query 107011 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 107070 ||| || || | ||| || | | || | | || | || | ||| || || Sbjct 1491 ATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTGAACCCGATGCC 1550 Query 107071 CCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 ||||| ||| ||||| ||||| || | | || || | |||||||| | ||| Sbjct 1551 GCCAGCATTCTTCGAGATCATTGCG--CAGGTCTTGAGTGTATCGTAGATACCCTCGATG 1608 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 |||||||||| | |||| |||||||| || || ||| || | || ||||||||| Sbjct 1609 CTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCAGCA 1668 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 107247 ||||||| || || | ||||| |||| ||| | | ||||| | || ||| ||||| Sbjct 1669 CTGAAGAGTGTCGGCGAAGCGTGCGTGAA-GTACTTGTTTGACATGTAGTTGTAGGTCTC 1727 Query 107248 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACAT 107301 | | ||| || || || || || || ||||| | ||| |||||||| | ||| Sbjct 1728 GATGGCAGCCTCGATATCCTCGCCATGAATGCCAACGGCGACACGCATGATCAT 1781 >seq1930 Length=68304 Score = 129 bits (142), Expect = 7e-25 Identities = 283/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 || || || ||| | | || || || || || |||| || || || | | |||||| Sbjct 60272 TCGAGAATGTCAGCCCTGTTGGTTGCTGCAATCACAATGATGCCAGTGTTACCTTCAAAA 60213 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||||||| ||||||| || ||||| | |||||||||| || | Sbjct 60212 CCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTCCCT---CCA 60156 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | | |||| ||| || |||||||| ||||||| || ||||| || Sbjct 60155 CCAATTCCAGTTCCTCTTTGCCGTCCAACAGCATCAATTTCATCAACAAATACAATGCAA 60096 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || || | | || ||||| || || | ||| || |||||||| Sbjct 60095 GGAGCATTCTCCTTTGCCTTCTTGAAAAGATCACGGACTCGAGAGGCACCAACACCAACG 60036 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | || | | | || | || || || ||| || |||||| || Sbjct 60035 AACATCTCAACAAACTCTGAACCTG-AGATAGAGAAAAACGGAACACCAGCTTCACCAGC 59977 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| || |||||||| || || || || ||| || || | || Sbjct 59976 AATTGCCTTGGCTAGCAGAGTCTTCCCAGTTCCAGGAGGACCGATAAGAAGAACCCCTTT 59917 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| || || | | || ||||| | ||| ||||| ||||| | ||| Sbjct 59916 TGGAATGCGAGCCCCAATTGCAGTGAACCTTTCAGGCTTCTTCAGAAACTCCACTACCTC 59857 >seq78534 Length=1057 Score = 125 bits (138), Expect = 8e-24 Identities = 325/485 (67%), Gaps = 14/485 (3%) Strand=Plus/Minus Query 106445 TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT 106504 |||||| | ||| || | || || || | ||||||||| || ||||| | | Sbjct 675 TTGACAAATGCTGGCAGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCA 616 Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 || ||||| | ||||| || || | |||||| ||| ||||| |||| ||||||||| Sbjct 615 GTATACTCAATGATTTCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGG 556 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| |||||| ||||| ||||| |||||| | || | || ||||| ||||| Sbjct 555 TTGCTCTTGCGGTTGCAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGA 496 Query 106625 GACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCT 106682 | || | || || | ||||| || | | || || | || | | ||||| | ||| Sbjct 495 GCCTCAATGATGGCATACCACAGTTTCTGAGCCT--TA-ATTGTCTGGCGGCCCTTTCCT 439 Query 106683 -CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 106741 || ||| || || ||| | | ||| || || || || || ||| || | ||| Sbjct 438 GCCTTCTCATATTTGGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCA 379 Query 106742 GG---TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || | | ||| ||||| | || | ||| | || || || || ||||||||| Sbjct 378 GGACATTCATTG---GGACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATG 322 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT-ACACCGAGCCTCTTCGTCACC 106857 || ||||| |||||||| || | | ||||||||||| | | || | ||||| | || Sbjct 321 AATAGGTCAGGAATCCAGAGAGCGTAGAAGAGATCTCTGGCTCTGA-CTTCTTCTTTGCC 263 Query 106858 TTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGAC 106917 ||||| || || | || |||| | | ||| ||||||||||||||||| || | Sbjct 262 GTGGTTCTTTCTCAAGTTGAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAAT 203 Query 106918 TGCGA 106922 |||| Sbjct 202 GGCGA 198 >seq2373 Length=61655 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/130 (76%), Gaps = 12/130 (9%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| || || ||||||||||| |||| ||||||||| | Sbjct 23220 AAATCCATCCATCTCTGTCAAGAGCTGATTAATAGTTTGCTCCCTCTCATCATTCCC--- 23276 Query 9341 CATACCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGAC 9394 ||| || ||| ||| | ||| | ||||| ||||||||||||||||| || || Sbjct 23277 ---ACCTCCAAGCCCTGCCCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATAAACAC 23333 Query 9395 AATACATGGT 9404 ||| || ||| Sbjct 23334 AATGCAGGGT 23343 >seq64904 Length=1455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 155043 GTATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGC 155102 ||||||||| | |||||| |||| ||||||||| || ||| | || | ||||| Sbjct 802 GTATGGTCGCATCGCACCAAGATCAGGTCTCGCTTCCAAACATTTTCTTGATACAGGTGC 861 Query 155103 GGGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAA 155153 |||||| || ||| | ||||||| ||||||||||||||| |||| ||||| Sbjct 862 GGGTGTCATAGATGCTGACTATAGAGGTGAAGTCAAAGTGCTTCTTTTCAA 912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588995613186360