Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq89524 91.5 2e-13 seq28578 86.0 9e-12 >seq89524 Length=860 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 112478 GCGGGTGTAGCTCAGTTGGTAGAGCTTCTGATTTCCAATCAGAATGTCGCGTGTTCGAGT 112537 |||||| ||||||||| |||||||| ||| || |||| |||||||||||||||||||| Sbjct 188 GCGGGTATAGCTCAGT-GGTAGAGCATCTCGTTGCCAACGAGAATGTCGCGTGTTCGAGT 130 Query 112538 CACGTTACCCGC 112549 |||||||||||| Sbjct 129 CACGTTACCCGC 118 >seq28578 Length=3912 Score = 86.0 bits (94), Expect = 9e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 112478 GCGGGTGTAGCTCAGTTGGTAGAGCTTCTGATTTCCAATCAGAATGTCGCGTGTTCGAGT 112537 |||||| ||||||||| |||||||| ||| || |||| |||||||||||||||||| | Sbjct 3732 GCGGGTATAGCTCAGT-GGTAGAGCATCTCGTTGCCAACGAGAATGTCGCGTGTTCGAAT 3790 Query 112538 CACGTTACCCGC 112549 |||||||||||| Sbjct 3791 CACGTTACCCGC 3802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751348053467160