Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq99200 152 6e-32
seq78534 131 2e-25
seq588 111 2e-19
seq57685 86.0 7e-12
>seq99200
Length=725
Score = 152 bits (168), Expect = 6e-32
Identities = 321/478 (67%), Gaps = 7/478 (1%)
Strand=Plus/Plus
Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056
|||| || || || ||||| | ||||||||| || ||||| || || | |||||| ||
Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309
Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116
|| || || || || || ||||| || || || || || || || || || || | ||
Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369
Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176
| |||| || |||| | |||||| ||| ||||| ||||||||||| |
Sbjct 370 GCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATG 429
Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATAT 19236
||||| || || || |||| || || || ||| || | || ||||| ||| ||
Sbjct 430 CATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAAT 489
Query 19237 GCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCG 19296
| ||| || | || ||||||||||| || || ||||| || || ||||| || ||
Sbjct 490 GTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAACCA 549
Query 19297 TAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCA 19356
||||| |||| || |||| || || || |||| | ||||| ||||| | || ||
Sbjct 550 TAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCG 609
Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416
|| || || || ||| || || || || || | || ||| ||||| | | | |||
Sbjct 610 TTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTATCTCTCA 669
Query 19417 TC-----TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTC 19469
|| |||| || || | ||| || | |||||||| || | ||| || |||||
Sbjct 670 TCGTCGTTGAGCTTGTTG--TGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCTTC 725
>seq78534
Length=1057
Score = 131 bits (144), Expect = 2e-25
Identities = 347/528 (66%), Gaps = 10/528 (2%)
Strand=Plus/Minus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|||| | ||| || ||||| || || || || |||| |||| |||||| | || |||
Sbjct 660 AGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATT 601
Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996
|| | || || || | ||||| || |||| || | || || | |||
Sbjct 600 TCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTG 541
Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056
|| || || ||||| ||||| || || | ||||| || |||||| |||||||| |
Sbjct 540 CAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCA 481
Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGT----TCGTATTT 48112
| ||| | || |||||| || ||| || | || || || |||||
Sbjct 480 TACCACAGTTTCTGAGCCTTAATTG----TCTGGCGGCCCTTTCCTGCCTTCTCATATTT 425
Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172
|| | || ||| ||||| || || || | | || |||||||||||||| ||
Sbjct 424 GGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCAGGACATTCATTGGG 365
Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232
|||||||| || ||| || ||| |||| ||||| |||| |||| || || |||||
Sbjct 364 ACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCA 305
Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT-TTAAGTT 48291
||||| || | ||| || | ||| | |||||| ||||| ||| || | |||||
Sbjct 304 GAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTT 245
Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351
|| | || | || |||||| |||||||| || | || || || | |||||||||
Sbjct 244 -GAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTC 186
Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399
|| || || |||||||| | || | ||||| |||| | | ||||
Sbjct 185 TCTTGTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTC 138
>seq588
Length=109198
Score = 111 bits (122), Expect = 2e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418
||| |||||||| | ||||| ||||||| || | || | || |||||| ||||| ||
Sbjct 13263 ACCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCC 13204
Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478
||| ||| | ||||| ||||| ||||||||| || |||| | ||||| || |||
Sbjct 13203 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGA 13144
Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538
| ||| || || || || ||| || | ||||||| ||| | || ||||| ||
Sbjct 13143 GACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATAT 13084
Query 48539 TCCTTCTATACTATCATCTATCAT 48562
||||| |||||||||||| ||||
Sbjct 13083 GCCTTCAATACTATCATCTTTCAT 13060
>seq57685
Length=1792
Score = 86.0 bits (94), Expect = 7e-12
Identities = 210/316 (66%), Gaps = 2/316 (1%)
Strand=Plus/Plus
Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184
||| || ||||| ||||| || | | | | ||||| || || || || ||||||| |
Sbjct 1185 CTCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGT 1244
Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-A 48243
|||||| ||| | | || | |||| || | ||| || ||||| || || ||| |
Sbjct 1245 CCAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGC-ATAGA 1303
Query 48244 ATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCA 48303
| | || | || | | || || ||||| ||| | ||| || || ||| | |
Sbjct 1304 AGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGA 1363
Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTC 48363
| |||||| |||||||| || | || || || | | || || || || || || |
Sbjct 1364 AGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCAC 1423
Query 48364 CTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTG 48423
|||| || | ||| | ||||||||||| | || | | |||||| || | |||||| |
Sbjct 1424 CTTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGG 1483
Query 48424 ATATACCATTGGTTCC 48439
|| | |||||||| ||
Sbjct 1484 ATGTGCCATTGGTGCC 1499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561170155593960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |