Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq99200 152 6e-32 seq78534 131 2e-25 seq588 111 2e-19 seq57685 86.0 7e-12 >seq99200 Length=725 Score = 152 bits (168), Expect = 6e-32 Identities = 321/478 (67%), Gaps = 7/478 (1%) Strand=Plus/Plus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 |||| || || || ||||| | ||||||||| || ||||| || || | |||||| || Sbjct 250 ATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATG 309 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 || || || || || || ||||| || || || || || || || || || || | || Sbjct 310 GAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGG 369 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 | |||| || |||| | |||||| ||| ||||| ||||||||||| | Sbjct 370 GCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATG 429 Query 19177 CATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATAT 19236 ||||| || || || |||| || || || ||| || | || ||||| ||| || Sbjct 430 CATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAAT 489 Query 19237 GCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCG 19296 | ||| || | || ||||||||||| || || ||||| || || ||||| || || Sbjct 490 GTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAACCA 549 Query 19297 TAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCA 19356 ||||| |||| || |||| || || || |||| | ||||| ||||| | || || Sbjct 550 TAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCG 609 Query 19357 TTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || || || || ||| || || || || || | || ||| ||||| | | | ||| Sbjct 610 TTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGAGATAAAGTATCTCTCA 669 Query 19417 TC-----TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTC 19469 || |||| || || | ||| || | |||||||| || | ||| || ||||| Sbjct 670 TCGTCGTTGAGCTTGTTG--TGCCAGTCGTGCATATCTTTTGAGAGATCCACCTCTTC 725 >seq78534 Length=1057 Score = 131 bits (144), Expect = 2e-25 Identities = 347/528 (66%), Gaps = 10/528 (2%) Strand=Plus/Minus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 |||| | ||| || ||||| || || || || |||| |||| |||||| | || ||| Sbjct 660 AGTGAGACAGACGCGAGATTGCAAACTGCGACTTCATCTGGAGCAGTATACTCAATGATT 601 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 || | || || || | ||||| || |||| || | || || | ||| Sbjct 600 TCGGTGCAGAGGTTGGATGACTTGATCGTTCCCAGGTTCTTTTGGTTGCTCTTGCGGTTG 541 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 || || || ||||| ||||| || || | ||||| || |||||| |||||||| | Sbjct 540 CAGGCATCTTTGTACAGCATGAATGGATTGCCAGTCTCAGTCTGAGCCTCAATGATGGCA 481 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGT----TCGTATTT 48112 | ||| | || |||||| || ||| || | || || || ||||| Sbjct 480 TACCACAGTTTCTGAGCCTTAATTG----TCTGGCGGCCCTTTCCTGCCTTCTCATATTT 425 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGG 48172 || | || ||| ||||| || || || | | || |||||||||||||| || Sbjct 424 GGTGAACAAGGCCTCGAATTCGTCGCCGTAGCAGTCAGACAAACCAGGACATTCATTGGG 365 Query 48173 ACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCA 48232 |||||||| || ||| || ||| |||| ||||| |||| |||| || || ||||| Sbjct 364 ACACATCAGTGTCCAGTCTGCATTCTTTTCTACTCGCTTCATGAATAGGTCAGGAATCCA 305 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTT-TTAAGTT 48291 ||||| || | ||| || | ||| | |||||| ||||| ||| || | ||||| Sbjct 304 GAGAGCGTAGAAGAGATCTCTGGCTCTGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTT 245 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 || | || | || |||||| |||||||| || | || || || | ||||||||| Sbjct 244 -GAGCCACTCGAATACATCAGCGTGCCATGGCTCAAGGTAAATGGCGAAGGCACCTGGTC 186 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTC 48399 || || || |||||||| | || | ||||| |||| | | |||| Sbjct 185 TCTTGTTGCCGCCTTGATCGACGTACCGAGCAGTGTTGTCAAAGACTC 138 >seq588 Length=109198 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | ||||| ||||||| || | || | || |||||| ||||| || Sbjct 13263 ACCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTAGCATTGGAACAATGCC 13204 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | ||||| ||||| ||||||||| || |||| | ||||| || ||| Sbjct 13203 ATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGAATATTGTGAACTGA 13144 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| ||| | || ||||| || Sbjct 13143 GACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTTTTAAAGTCTCATATAT 13084 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 13083 GCCTTCAATACTATCATCTTTCAT 13060 >seq57685 Length=1792 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/316 (66%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| || ||||| ||||| || | | | | ||||| || || || || ||||||| | Sbjct 1185 CTCGAACTCATCGCCATAGACGTCAGCAAGACCAGGGCACTCGTTCGGGCACATCAGCGT 1244 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-A 48243 |||||| ||| | | || | |||| || | ||| || ||||| || || ||| | Sbjct 1245 CCAATCTCCATTCTGCTCGACACGCTTCATGAAAAGATCGGGAATCCAGAGTGC-ATAGA 1303 Query 48244 ATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCA 48303 | | || | || | | || || ||||| ||| | ||| || || ||| | | Sbjct 1304 AGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGA 1363 Query 48304 TTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTC 48363 | |||||| |||||||| || | || || || | | || || || || || || | Sbjct 1364 AGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCAC 1423 Query 48364 CTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTG 48423 |||| || | ||| | ||||||||||| | || | | |||||| || | |||||| | Sbjct 1424 CTTGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGG 1483 Query 48424 ATATACCATTGGTTCC 48439 || | |||||||| || Sbjct 1484 ATGTGCCATTGGTGCC 1499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561170155593960