Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq112858 118 3e-22 seq99257 91.5 5e-14 >seq112858 Length=569 Score = 118 bits (130), Expect = 3e-22 Identities = 168/232 (72%), Gaps = 11/232 (5%) Strand=Plus/Minus Query 21287 AAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCC 21346 |||||||| |||| |||||| || | || || |||| |||||||||||| ||||| Sbjct 481 AAGCTGCTCGCGAAGGAGCTCGGCGTGCCGGTCATCGCGCTGTCGCAGCTGAACCGAGGG 422 Query 21347 CTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATC 21406 ||||||||| || ||||||| || ||| || ||||| |||||||| ||| ||||| Sbjct 421 TCGGAGCAGCGCGCGGACAAGCGGCCCGCGATCTCCGACCTCCGCGAGTCGGGGTCGATC 362 Query 21407 GAGCAGGACGCCGA---TGTGATCATGTTCGTGTACCGCGACGAG-GTCTACCACCCGGA 21462 |||||||||||||| |||||| || || |||| || ||| | | | ||| || Sbjct 361 GAGCAGGACGCCGACATCGTGATCCTG---CTGCACCGGGA-GAGCGCGTTCGACCGCGA 306 Query 21463 TACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514 | | | ||| || | || || | ||| |||||||||||||| |||| Sbjct 305 TCAGCCGAACCCCGAC---GCCGACCTCATCGTCGCGAAGCACCGCGCCGGC 257 >seq99257 Length=723 Score = 91.5 bits (100), Expect = 5e-14 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 21292 GCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGA 21351 |||||| | |||||| | | || | |||| ||||||||||| || | || Sbjct 677 GCTGGCCAAGGAGCTGGCGGTGCCGATCATCGCCCTGTCGCAGCTGTCGCGTCAGGTCGA 618 Query 21352 GCAGCG-GCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGC 21410 | | || | ||| |||||| ||| | | |||||||||||||| || || ||||||||| Sbjct 617 GAACCGCGACGA-CAAGCGCCCGCAGCTCTCGGACCTGCGCGAATCGGGCTCGATCGAGC 559 Query 21411 AGGACGCCGATGTGATCATGTTCGTGTACCGCGACGA 21447 |||||||||| ||| | |||||||||| |||||| || Sbjct 558 AGGACGCCGACGTGGTGATGTTCGTGTTCCGCGAGGA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156861164872946