Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq99200 129 7e-25 >seq99200 Length=725 Score = 129 bits (142), Expect = 7e-25 Identities = 325/492 (66%), Gaps = 3/492 (1%) Strand=Plus/Plus Query 37196 ACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttt 37255 ||||||||| | | |||| || || || || || | || ||||| | |||||| || Sbjct 234 ACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTT 293 Query 37256 tttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAA 37315 || | ||| || || | || ||||| || || ||||| || || ||||| || || || Sbjct 294 CTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAA 353 Query 37316 TGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATC 37375 ||| || |||||| ||||| | | |||||| |||||| | | ||| || Sbjct 354 TGCCACCAGACGTTGGGCGAAACTGCTTTCCTTATCAGAGATCCATCTCAACGCCCACTC 413 Query 37376 TGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTC 37435 ||||| | ||| ||| || || || || | ||||| | | ||| | | Sbjct 414 AGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTGCTT 473 Query 37436 ACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAAT 37495 ||| | | | | |||||||| || || || |||||||| ||||| ||||| || || Sbjct 474 TGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTCCAT 533 Query 37496 AGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCT 37555 ||||| ||||||||||| || | ||| || | || ||| || || | || || Sbjct 534 CATGATCTGGAAACCATAAAAGCATCGAGCCTCTGGTACTTGCACCTCACCCGAGAATCT 593 Query 37556 CTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTT 37615 || | | ||| || || || || || ||| || || ||||||||||| || | | Sbjct 594 CTCGACAAGGTTCTCGTTGACAATACCGTCAGAGGCAGCGAAGAAAGCAAGGACGTGTGA 653 Query 37616 TATAAAATGTCTTTCATCAT--TTGATAAT-TTTTTCCAATCATTAATATCTTTTGATAA 37672 ||||| | ||| ||||| | |||| | || | ||| || | ||||||||||| | Sbjct 654 GATAAAGTATCTCTCATCGTCGTTGAGCTTGTTGTGCCAGTCGTGCATATCTTTTGAGAG 713 Query 37673 ATCAACTTCATC 37684 ||| || || || Sbjct 714 ATCCACCTCTTC 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591327712387560