Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq35216 217 6e-52 seq85577 109 2e-19 seq65589 104 9e-18 seq116439 84.2 9e-12 >seq35216 Length=2640 Score = 217 bits (240), Expect = 6e-52 Identities = 720/1094 (66%), Gaps = 37/1094 (3%) Strand=Plus/Minus Query 53008 CGGCTTTCGCGCGCTGGATTTGGACGGACACGAAGCGCGCCGACCGGCTCGTCAACTACT 53067 |||| |||| ||||||| | ||| |||| | | || || |||||||| | | || Sbjct 1364 CGGCCTTCGAGCGCTGGGTGTGGCAGGACGCCGATCGGGCGGACCGGCTGTCCCGCATCT 1305 Query 53068 ACAACGAGAACTTCAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGC 53127 |||| || |||||||||| | | |||||| |||||||| |||||| ||||| Sbjct 1304 ACAATGACCGCTTCAACAACCTGGTGCCGCGGTCCTTCGACGGGAGCCACCTGCAGCTGC 1245 Query 53128 CGGGCGTATCGCTGCGCT-TCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGC 53186 |||||| || | ||| || | |||||| |||||||||| | |||||||| | | Sbjct 1244 CGGGCGCGTC-CAGCGTGATCCAGATGCGCGGCCACCAGAAGCGGGTGATCTGGCGGGTC 1186 Query 53187 ATTCAGGAAGGCGAT-ATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGAT 53245 || ||| | || | | ||| |||| ||||| |||||||| || ||||| ||| | || Sbjct 1185 AT-CAGCACGGGCACGACCTACATCGCCCACGCGGTCGGCGCCGGGAAGACCTTCTCCAT 1127 Query 53246 GATCGCGACGGGCATGGAGGAGCGTCGGCTCGGCCTGTCCAACAAGCCGATGTACGCGGT 53305 | |||| || ||||||| |||| |||||||||||| | |||| | ||| | ||| Sbjct 1126 GGCCGCGGCGATCATGGAGCAGCGCCGGCTCGGCCTGGTGACCAAGGCCATGATGGTGGT 1067 Query 53306 GCCGAACCACATGCTCGCGCAATTCGCG-CGCGAGTTCCTTGAGCTGTACCCGGCCGCGA 53364 |||| ||| || |||| | || | ||||||||||| ||| |||||| ||| Sbjct 1066 GCCG-GGCACTGCCTGGCGC-AGGCGAGCCGCGAGTTCCTGCTGCTCTACCCGAACGCCC 1009 Query 53365 ACATCATGGTCGCGGACGAGCAGAATTTCCACACCCACAACCGCCGCCGGTTCGTCGCGC 53424 | ||| |||||||||||||| || ||| | | || || | || ||| | || | Sbjct 1008 AGATCCTGGTCGCGGACGAGACCAACTTCGCCCGTGAGAAGCGGCAGCGCTTCCTGGCCC 949 Query 53425 AGGCCGCGCTCAACAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGGCCGCAT-- 53482 |||||| || | |||| ||||||||||| ||| || ||| ||| Sbjct 948 GGGCCGCCACGGGCACCTGGGACTGCATCATCATCACCCACAGCGCCTTCAAGTTCATCC 889 Query 53483 CGGCATGTCCGACGAGTACGCCTCGGCGTTCATCCGCGACCAGATCGACGAG-TGGAAAG 53541 |||| | | || ||| || || | | ||| || |||||| | ||| | | Sbjct 888 CGGCTCCTGC-AC-AGTTCGAGAAGGGGCTGATCGACGCGCAGATCCA-GAGCTACGTCG 832 Query 53542 CCGCGCTCGACGAGACGGACAAGGGCGACCGCATCACGCGCAAGCAGATCGAGCGCCGCA 53601 | ||| || | ||||| | |||||||||||| ||||||| | | ||||| | | Sbjct 831 ACCTGCTGGAGCGGGTGGACAGCGACGACCGCATCACCCGCAAGCGGCTGGAGCGGCTGA 772 Query 53602 TCGNNNNNNNNNNNNNNNNGCTGGAGGCGAAACAGGGCGGCGAGAAGAAGGACAAGGTGC 53661 | |||||||||| | | | | ||| | |||| ||| Sbjct 771 AGGAGCGCATGGAGGCCAAGCTGGAGGCG---CTCGCCACCCGCAAGGACGACA---TGC 718 Query 53662 TGTCGTTCGAGGAGCTGGGCGTCGACCGCCTGTTCGTCGACGAGTTCCACGAGTTCCGAA 53721 || | ||| ||| | |||||||||| ||| | || |||||| || |||||| | | Sbjct 717 TGACCATCGGCGAGATCGGCGTCGACCAGCTGGTGGTGGACGAGGCGCAGGAGTTCAGGA 658 Query 53722 AACTCGACTTCGCGACGCAGCA-GAGCAACATCAAGGGCATCGACCCGGCGGGCTCGCAG 53780 | || |||||| || || || | || | | || || ||| ||||| || |||||| Sbjct 657 AGCTGAGCTTCGCCAC-CAACATGGCCAGCCTGAAAGGGATCAGCCCGGACGGTTCGCAG 599 Query 53781 CGCGCGATGGACCTGTTCATGAAGGTCCAATACCT-GCGCAGCAAGAAGCCGGGCCG--- 53836 ||||| |||||| | | ||| | ||| | |||||| | |||||| || Sbjct 598 CGCGCCTGGGACCTCTACGCCAAGTCGCGCTACATCGCGCAG-ACCCAGCCGGCGCGGAA 540 Query 53837 CGCGCTCGTGGCCGCGTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTCTACACCGC 53896 | | || || ||||| ||||||||| |||| ||||| ||||||||| | | || | Sbjct 539 CCTGATCCTG---GCGTCGGGCACGCCGATCACCAACACCATGGGCGAGATGTTCAGCCT 483 Query 53897 ACAACGCTTCTTCCAGCCCGAGCAGCTTGCCGAGGATGGTCTGGATACGTTCGACGCGTG 53956 || |||||| | ||||| || ||| | ||| || ||| | ||||||||| || Sbjct 482 GCAGCGCTTCATGCAGCCGGACGTGCTGGAGGAGCGCGGCCTGCACGAGTTCGACGCCTG 423 Query 53957 GGC--CAACCAATACGGTGACATCGTTGCGGGCTTCGAGCAGAACGCCG-CCGGCGGCTA 54013 ||| | ||| | ||| |||| || ||| | |||| | | |||| ||||| ||| Sbjct 422 GGCCTCGACC--TTCGGCGACACGGTGACGGAACTGGAGCTGCA-GCCGTCCGGCAACTA 366 Query 54014 CGAGGTCGTGAGCCGGTTCGCGAAGTTCCAGAACGTGCCCGAGCTGATGCGCCGCG-TGC 54072 | || |||| ||||||||||| ||| |||||| | || ||||| |||| | | | Sbjct 365 CCAGCCGGTGACGCGGTTCGCGAACTTCGTCAACGTGGCGGACCTGAT-CGCCATGTTCC 307 Query 54073 GCTCGTTCATGGAC 54086 ||||| || |||| Sbjct 306 GCTCGGTCGCGGAC 293 >seq85577 Length=924 Score = 109 bits (120), Expect = 2e-19 Identities = 217/307 (71%), Gaps = 22/307 (7%) Strand=Plus/Minus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||||||||| |||||| |||||||||||||||| ||| || ||| | |||| ||| Sbjct 794 CGTCAACAAGGTCATCATCGTCGGCAATCTCGGGCGCGATCCCGAATCGCGCTCGTTCCA 735 Query 10032 GAGCGGCGACGCAA--TCTCCAACATCCGCCTCGCTACGACCGA-TCGCTACAAGGACAA 10088 || ||||| |||| || ||| | ||| |||| || | ||| ||| | |||||| Sbjct 734 GAACGGCG--GCAAGGTCGTGAACCTGCGCATCGCGACCAGCGAGTCG-TGGAAGGAC-- 680 Query 10089 GGCGA--GCGGCGAGATGAAGG-AATCGACCGAATGGCA-CCG--CGTCAGCTTCTTCGG 10142 || | ||||||| |||| || |||||||||||| || || | |||| || Sbjct 679 CGCAATTCCGGCGAGCGCAAGGAAAAAGACCGAATGGCATTCGGTCGCGATCTTCAACGA 620 Query 10143 CCGCCTCGCCGAGATCGTCGACGAG---TACCTGCGCAAGGGCGCGCCGGTCTACATCGA 10199 |||||||| | ||||| |||| | |||||||||||| | ||| |||||||| Sbjct 619 AGGCCTCGCC---AACGTCGCCGAGCGTTTCCTGCGCAAGGGGTCCAAGGTTTACATCGA 563 Query 10200 GGGC-CGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCG 10258 |||| ||| | | || || || ||||||||| | |||||||| |||| |||| Sbjct 562 GGGCGCGC-TGCAGACCCGCAAATGGCAGGATCAGCAGGGCCAGGACAAGTACAGCACCG 504 Query 10259 AGATCGT 10265 ||||||| Sbjct 503 AGATCGT 497 >seq65589 Length=857 Score = 104 bits (114), Expect = 9e-18 Identities = 180/257 (70%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 ||||||||| || || || || ||||||||||| ||||||||| | |||| |||| Sbjct 104 CGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGACCCGGAGATCCGCCGCCTCGG 163 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGA-TCGCTACAAGGACAAGG 10090 ||||| | ||| |||| | || |||| || | || ||| | |||||||||| Sbjct 164 CTCGGGCGATCCGGTCTGCAACCTGCGGATCGCGACCTCGGAGTCG-TGGAAGGACAAGG 222 Query 10091 CGAGCGGCGAGATGAAGGAATCGACCGAATGGCAC-CG--CGTCAGCTTCTTCGGCCGCC 10147 | ||||||| ||||| |||||| |||||| || ||| | || | || | || Sbjct 223 CCTCCGGCGAGCGCAAGGAGAAGACCGAGTGGCACTCGGTCGTGATCTACAACGACAACC 282 Query 10148 TCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCA 10207 | || | | | ||| ||||||||||||||||| || |||||||||||| || | Sbjct 283 TGTCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACATCGAAGGTCAGT 342 Query 10208 TCCGCACGCGGAAGTGG 10224 | | || ||||||||| Sbjct 343 TGCAGACCCGGAAGTGG 359 >seq116439 Length=532 Score = 84.2 bits (92), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 9/204 (4%) Strand=Plus/Minus Query 54852 CGCAAGGCGCGGTTCATCGAACAGGCGCTCAACGGCGA-CGACAGCGTGCGCTCGCTCGA 54910 |||||||||||||||||||| || || |||||| || | | ||| | | || Sbjct 499 CGCAAGGCGCGGTTCATCGAGGCCGCACTGGGCGGCGATCGGTCG-ATCCGCCGGTTGGA 441 Query 54911 GGACGTGTCCGAGGCATCGGCA-----TTCGACATGGCCGCCGCGCTGGCGTCGGGCGAC 54965 ||||||| |||| || || || |||| ||||||| || ||||| ||||||||| Sbjct 440 GGACGTGGCCGA--CACCGCCAGCCAGTTCGCCATGGCCAAGGCCCTGGCCTCGGGCGAC 383 Query 54966 GAGCGCTACATGAAGCTGGCGGGCCTGAAGGCCGACGTCGAGCGGCTGGAGCGCCTGAGC 55025 ||||| ||| || |||||| ||| | ||||| | | ||| ||||||| ||| | Sbjct 382 CAGCGCCTGATGCAGAAGGCGGGGCTGGAAGCCGAGTTGGCGCGCATGGAGCGGCTGCGG 323 Query 55026 TACGCGCACCACGACGACCAGAAC 55049 || ||| |||||||||| || Sbjct 322 GCGGCACACTTCGACGACCAGCAC 299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197475033904962