Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_018452.1
Length=61847
Score E
Sequences producing significant alignments: (Bits) Value
seq35216 217 6e-52
seq85577 109 2e-19
seq65589 104 9e-18
seq116439 84.2 9e-12
>seq35216
Length=2640
Score = 217 bits (240), Expect = 6e-52
Identities = 720/1094 (66%), Gaps = 37/1094 (3%)
Strand=Plus/Minus
Query 53008 CGGCTTTCGCGCGCTGGATTTGGACGGACACGAAGCGCGCCGACCGGCTCGTCAACTACT 53067
|||| |||| ||||||| | ||| |||| | | || || |||||||| | | ||
Sbjct 1364 CGGCCTTCGAGCGCTGGGTGTGGCAGGACGCCGATCGGGCGGACCGGCTGTCCCGCATCT 1305
Query 53068 ACAACGAGAACTTCAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGC 53127
|||| || |||||||||| | | |||||| |||||||| |||||| |||||
Sbjct 1304 ACAATGACCGCTTCAACAACCTGGTGCCGCGGTCCTTCGACGGGAGCCACCTGCAGCTGC 1245
Query 53128 CGGGCGTATCGCTGCGCT-TCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGC 53186
|||||| || | ||| || | |||||| |||||||||| | |||||||| | |
Sbjct 1244 CGGGCGCGTC-CAGCGTGATCCAGATGCGCGGCCACCAGAAGCGGGTGATCTGGCGGGTC 1186
Query 53187 ATTCAGGAAGGCGAT-ATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGAT 53245
|| ||| | || | | ||| |||| ||||| |||||||| || ||||| ||| | ||
Sbjct 1185 AT-CAGCACGGGCACGACCTACATCGCCCACGCGGTCGGCGCCGGGAAGACCTTCTCCAT 1127
Query 53246 GATCGCGACGGGCATGGAGGAGCGTCGGCTCGGCCTGTCCAACAAGCCGATGTACGCGGT 53305
| |||| || ||||||| |||| |||||||||||| | |||| | ||| | |||
Sbjct 1126 GGCCGCGGCGATCATGGAGCAGCGCCGGCTCGGCCTGGTGACCAAGGCCATGATGGTGGT 1067
Query 53306 GCCGAACCACATGCTCGCGCAATTCGCG-CGCGAGTTCCTTGAGCTGTACCCGGCCGCGA 53364
|||| ||| || |||| | || | ||||||||||| ||| |||||| |||
Sbjct 1066 GCCG-GGCACTGCCTGGCGC-AGGCGAGCCGCGAGTTCCTGCTGCTCTACCCGAACGCCC 1009
Query 53365 ACATCATGGTCGCGGACGAGCAGAATTTCCACACCCACAACCGCCGCCGGTTCGTCGCGC 53424
| ||| |||||||||||||| || ||| | | || || | || ||| | || |
Sbjct 1008 AGATCCTGGTCGCGGACGAGACCAACTTCGCCCGTGAGAAGCGGCAGCGCTTCCTGGCCC 949
Query 53425 AGGCCGCGCTCAACAACCCGGACGCGATCATCATCACGCACTCGGCGTTCGGCCGCAT-- 53482
|||||| || | |||| ||||||||||| ||| || ||| |||
Sbjct 948 GGGCCGCCACGGGCACCTGGGACTGCATCATCATCACCCACAGCGCCTTCAAGTTCATCC 889
Query 53483 CGGCATGTCCGACGAGTACGCCTCGGCGTTCATCCGCGACCAGATCGACGAG-TGGAAAG 53541
|||| | | || ||| || || | | ||| || |||||| | ||| | |
Sbjct 888 CGGCTCCTGC-AC-AGTTCGAGAAGGGGCTGATCGACGCGCAGATCCA-GAGCTACGTCG 832
Query 53542 CCGCGCTCGACGAGACGGACAAGGGCGACCGCATCACGCGCAAGCAGATCGAGCGCCGCA 53601
| ||| || | ||||| | |||||||||||| ||||||| | | ||||| | |
Sbjct 831 ACCTGCTGGAGCGGGTGGACAGCGACGACCGCATCACCCGCAAGCGGCTGGAGCGGCTGA 772
Query 53602 TCGNNNNNNNNNNNNNNNNGCTGGAGGCGAAACAGGGCGGCGAGAAGAAGGACAAGGTGC 53661
| |||||||||| | | | | ||| | |||| |||
Sbjct 771 AGGAGCGCATGGAGGCCAAGCTGGAGGCG---CTCGCCACCCGCAAGGACGACA---TGC 718
Query 53662 TGTCGTTCGAGGAGCTGGGCGTCGACCGCCTGTTCGTCGACGAGTTCCACGAGTTCCGAA 53721
|| | ||| ||| | |||||||||| ||| | || |||||| || |||||| | |
Sbjct 717 TGACCATCGGCGAGATCGGCGTCGACCAGCTGGTGGTGGACGAGGCGCAGGAGTTCAGGA 658
Query 53722 AACTCGACTTCGCGACGCAGCA-GAGCAACATCAAGGGCATCGACCCGGCGGGCTCGCAG 53780
| || |||||| || || || | || | | || || ||| ||||| || ||||||
Sbjct 657 AGCTGAGCTTCGCCAC-CAACATGGCCAGCCTGAAAGGGATCAGCCCGGACGGTTCGCAG 599
Query 53781 CGCGCGATGGACCTGTTCATGAAGGTCCAATACCT-GCGCAGCAAGAAGCCGGGCCG--- 53836
||||| |||||| | | ||| | ||| | |||||| | |||||| ||
Sbjct 598 CGCGCCTGGGACCTCTACGCCAAGTCGCGCTACATCGCGCAG-ACCCAGCCGGCGCGGAA 540
Query 53837 CGCGCTCGTGGCCGCGTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTCTACACCGC 53896
| | || || ||||| ||||||||| |||| ||||| ||||||||| | | || |
Sbjct 539 CCTGATCCTG---GCGTCGGGCACGCCGATCACCAACACCATGGGCGAGATGTTCAGCCT 483
Query 53897 ACAACGCTTCTTCCAGCCCGAGCAGCTTGCCGAGGATGGTCTGGATACGTTCGACGCGTG 53956
|| |||||| | ||||| || ||| | ||| || ||| | ||||||||| ||
Sbjct 482 GCAGCGCTTCATGCAGCCGGACGTGCTGGAGGAGCGCGGCCTGCACGAGTTCGACGCCTG 423
Query 53957 GGC--CAACCAATACGGTGACATCGTTGCGGGCTTCGAGCAGAACGCCG-CCGGCGGCTA 54013
||| | ||| | ||| |||| || ||| | |||| | | |||| ||||| |||
Sbjct 422 GGCCTCGACC--TTCGGCGACACGGTGACGGAACTGGAGCTGCA-GCCGTCCGGCAACTA 366
Query 54014 CGAGGTCGTGAGCCGGTTCGCGAAGTTCCAGAACGTGCCCGAGCTGATGCGCCGCG-TGC 54072
| || |||| ||||||||||| ||| |||||| | || ||||| |||| | | |
Sbjct 365 CCAGCCGGTGACGCGGTTCGCGAACTTCGTCAACGTGGCGGACCTGAT-CGCCATGTTCC 307
Query 54073 GCTCGTTCATGGAC 54086
||||| || ||||
Sbjct 306 GCTCGGTCGCGGAC 293
>seq85577
Length=924
Score = 109 bits (120), Expect = 2e-19
Identities = 217/307 (71%), Gaps = 22/307 (7%)
Strand=Plus/Minus
Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031
||||||||| |||||| |||||||||||||||| ||| || ||| | |||| |||
Sbjct 794 CGTCAACAAGGTCATCATCGTCGGCAATCTCGGGCGCGATCCCGAATCGCGCTCGTTCCA 735
Query 10032 GAGCGGCGACGCAA--TCTCCAACATCCGCCTCGCTACGACCGA-TCGCTACAAGGACAA 10088
|| ||||| |||| || ||| | ||| |||| || | ||| ||| | ||||||
Sbjct 734 GAACGGCG--GCAAGGTCGTGAACCTGCGCATCGCGACCAGCGAGTCG-TGGAAGGAC-- 680
Query 10089 GGCGA--GCGGCGAGATGAAGG-AATCGACCGAATGGCA-CCG--CGTCAGCTTCTTCGG 10142
|| | ||||||| |||| || |||||||||||| || || | |||| ||
Sbjct 679 CGCAATTCCGGCGAGCGCAAGGAAAAAGACCGAATGGCATTCGGTCGCGATCTTCAACGA 620
Query 10143 CCGCCTCGCCGAGATCGTCGACGAG---TACCTGCGCAAGGGCGCGCCGGTCTACATCGA 10199
|||||||| | ||||| |||| | |||||||||||| | ||| ||||||||
Sbjct 619 AGGCCTCGCC---AACGTCGCCGAGCGTTTCCTGCGCAAGGGGTCCAAGGTTTACATCGA 563
Query 10200 GGGC-CGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCG 10258
|||| ||| | | || || || ||||||||| | |||||||| |||| ||||
Sbjct 562 GGGCGCGC-TGCAGACCCGCAAATGGCAGGATCAGCAGGGCCAGGACAAGTACAGCACCG 504
Query 10259 AGATCGT 10265
|||||||
Sbjct 503 AGATCGT 497
>seq65589
Length=857
Score = 104 bits (114), Expect = 9e-18
Identities = 180/257 (70%), Gaps = 5/257 (2%)
Strand=Plus/Plus
Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031
||||||||| || || || || ||||||||||| ||||||||| | |||| ||||
Sbjct 104 CGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGACCCGGAGATCCGCCGCCTCGG 163
Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGA-TCGCTACAAGGACAAGG 10090
||||| | ||| |||| | || |||| || | || ||| | ||||||||||
Sbjct 164 CTCGGGCGATCCGGTCTGCAACCTGCGGATCGCGACCTCGGAGTCG-TGGAAGGACAAGG 222
Query 10091 CGAGCGGCGAGATGAAGGAATCGACCGAATGGCAC-CG--CGTCAGCTTCTTCGGCCGCC 10147
| ||||||| ||||| |||||| |||||| || ||| | || | || | ||
Sbjct 223 CCTCCGGCGAGCGCAAGGAGAAGACCGAGTGGCACTCGGTCGTGATCTACAACGACAACC 282
Query 10148 TCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCA 10207
| || | | | ||| ||||||||||||||||| || |||||||||||| || |
Sbjct 283 TGTCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACATCGAAGGTCAGT 342
Query 10208 TCCGCACGCGGAAGTGG 10224
| | || |||||||||
Sbjct 343 TGCAGACCCGGAAGTGG 359
>seq116439
Length=532
Score = 84.2 bits (92), Expect = 9e-12
Identities = 143/204 (70%), Gaps = 9/204 (4%)
Strand=Plus/Minus
Query 54852 CGCAAGGCGCGGTTCATCGAACAGGCGCTCAACGGCGA-CGACAGCGTGCGCTCGCTCGA 54910
|||||||||||||||||||| || || |||||| || | | ||| | | ||
Sbjct 499 CGCAAGGCGCGGTTCATCGAGGCCGCACTGGGCGGCGATCGGTCG-ATCCGCCGGTTGGA 441
Query 54911 GGACGTGTCCGAGGCATCGGCA-----TTCGACATGGCCGCCGCGCTGGCGTCGGGCGAC 54965
||||||| |||| || || || |||| ||||||| || ||||| |||||||||
Sbjct 440 GGACGTGGCCGA--CACCGCCAGCCAGTTCGCCATGGCCAAGGCCCTGGCCTCGGGCGAC 383
Query 54966 GAGCGCTACATGAAGCTGGCGGGCCTGAAGGCCGACGTCGAGCGGCTGGAGCGCCTGAGC 55025
||||| ||| || |||||| ||| | ||||| | | ||| ||||||| ||| |
Sbjct 382 CAGCGCCTGATGCAGAAGGCGGGGCTGGAAGCCGAGTTGGCGCGCATGGAGCGGCTGCGG 323
Query 55026 TACGCGCACCACGACGACCAGAAC 55049
|| ||| |||||||||| ||
Sbjct 322 GCGGCACACTTCGACGACCAGCAC 299
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 197475033904962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |