Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_018836.1
Length=50255
Score E
Sequences producing significant alignments: (Bits) Value
seq59665 230 7e-56
>seq59665
Length=1686
Score = 230 bits (254), Expect = 7e-56
Identities = 391/558 (70%), Gaps = 19/558 (3%)
Strand=Plus/Plus
Query 39433 GCGGCGTGAGTGAGGGGCATGTGCCGGGCGAAGTGCTCCTCCATCTGCTCGGCCGCCATC 39492
|||||||| || |||||||| || || || | ||| |||||||||||| |||||
Sbjct 813 GCGGCGTGCGTCAGGGGCATCAGCTCGGACCAGCGGGTCTCGATCTGCTCGGCCACCATC 872
Query 39493 TCGATCTCGCGCTGCGGGAACGAGGGGAACCGCG---CGGCCTCCGCGGTGGTGCGCAGG 39549
|||||||||||||||||||||||||| | || ||| | | ||||||||||
Sbjct 873 TCGATCTCGCGCTGCGGGAACGAGGGCGCCTTCGACTCGGGATGCT---TGGTGCGCAGC 929
Query 39550 CTCAGGAAGTGCATCAGGCTGCGGGCGTTGCAGGTGGCGAAGAACGAGGTGTAC--GTAC 39607
| ||||| |||||| |||||||| || || | | || | |||| || |
Sbjct 930 GAGACGAAGTTCATCAGCGCACGGGCGTTCATCGTCACGTACATGGACGAGTACAGGTTC 989
Query 39608 CGACGGGGAGGGCGGAGCGGGCGACCTCGCGGGCGATGCCGGCCCGGAGCATCACCTGGT 39667
| || || || || || |||||||| |||| ||| || ||||||| | |||
Sbjct 990 AGC--GGCAGCACGATCCGCGCCACCTCGCGAGCGACGCCCGCGTCGAGCATCGACCGGT 1047
Query 39668 AGGCGTTCCAGGC-GTGGCGGTA-GCTCTCGCG-GGCGACGTCCCGCATCACGTTGTACT 39724
|||| | | || | ||| ||| ||| |||| |||| || | ||| | ||
Sbjct 1048 AGGCCTCGTACGCCGCCACGGACTGCTGCCGCACGGCGCCGTCGACCAGCGCGTGCTGCT 1107
Query 39725 GGAGCGGGGTGCCCGGCTCGAACCGGTAGGCGCCAGGCTTGCCGACCTGCTGGAGGTTGC 39784
| | |||||||| |||| ||||||||| || ||| |||||| ||||| |
Sbjct 1108 CGTC---GCTGCCCGGCAGGAACTCGTAGGCGCCGGGGCGGCCCACCTGCACCAGGTTCC 1164
Query 39785 GGTCCTCGGCCGGGATGTAGAACACCGGCTTCAACTCCCGGTAGCGCGCTGACTCCTCGT 39844
||||| | ||| | ||||||||| ||| || ||| |||||||| | ||||||||||
Sbjct 1165 GGTCCCGCGACGGCACGTAGAACACGGGCCGCAGCTCGCGGTAGCGGCCCGACTCCTCGT 1224
Query 39845 TGTAACTCCAGCCCACCCTGTGACGCATCCACTCACGGGCCACGAACATGGGGGCCTGGA 39904
|||| || | | | ||| ||||| |||| ||| |||||| || || ||||| |
Sbjct 1225 TGTAGG---AGGCGATGCGGTGCCGCATGAACTCGCGGAACACGAAGATCGGCGCCTGCA 1281
Query 39905 CCAGGAAGGTCATCGAGTTGTGCTCGAAGGGGCTGCCGTGCCGGTCCCGCATCAGGTAGT 39964
| |||||||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 1282 CGTAGAAGGTCATCGAGTTGTGCTCGAACGGCGACCCGTGGCGGTCGCGCATCAGGTAGT 1341
Query 39965 TGATCAGGCCGGCGGTCG 39982
|||||||||| ||||||
Sbjct 1342 TGATCAGGCCCCCGGTCG 1359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160439479325106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |