Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_018836.1 Length=50255 Score E Sequences producing significant alignments: (Bits) Value seq59665 230 7e-56 >seq59665 Length=1686 Score = 230 bits (254), Expect = 7e-56 Identities = 391/558 (70%), Gaps = 19/558 (3%) Strand=Plus/Plus Query 39433 GCGGCGTGAGTGAGGGGCATGTGCCGGGCGAAGTGCTCCTCCATCTGCTCGGCCGCCATC 39492 |||||||| || |||||||| || || || | ||| |||||||||||| ||||| Sbjct 813 GCGGCGTGCGTCAGGGGCATCAGCTCGGACCAGCGGGTCTCGATCTGCTCGGCCACCATC 872 Query 39493 TCGATCTCGCGCTGCGGGAACGAGGGGAACCGCG---CGGCCTCCGCGGTGGTGCGCAGG 39549 |||||||||||||||||||||||||| | || ||| | | |||||||||| Sbjct 873 TCGATCTCGCGCTGCGGGAACGAGGGCGCCTTCGACTCGGGATGCT---TGGTGCGCAGC 929 Query 39550 CTCAGGAAGTGCATCAGGCTGCGGGCGTTGCAGGTGGCGAAGAACGAGGTGTAC--GTAC 39607 | ||||| |||||| |||||||| || || | | || | |||| || | Sbjct 930 GAGACGAAGTTCATCAGCGCACGGGCGTTCATCGTCACGTACATGGACGAGTACAGGTTC 989 Query 39608 CGACGGGGAGGGCGGAGCGGGCGACCTCGCGGGCGATGCCGGCCCGGAGCATCACCTGGT 39667 | || || || || || |||||||| |||| ||| || ||||||| | ||| Sbjct 990 AGC--GGCAGCACGATCCGCGCCACCTCGCGAGCGACGCCCGCGTCGAGCATCGACCGGT 1047 Query 39668 AGGCGTTCCAGGC-GTGGCGGTA-GCTCTCGCG-GGCGACGTCCCGCATCACGTTGTACT 39724 |||| | | || | ||| ||| ||| |||| |||| || | ||| | || Sbjct 1048 AGGCCTCGTACGCCGCCACGGACTGCTGCCGCACGGCGCCGTCGACCAGCGCGTGCTGCT 1107 Query 39725 GGAGCGGGGTGCCCGGCTCGAACCGGTAGGCGCCAGGCTTGCCGACCTGCTGGAGGTTGC 39784 | | |||||||| |||| ||||||||| || ||| |||||| ||||| | Sbjct 1108 CGTC---GCTGCCCGGCAGGAACTCGTAGGCGCCGGGGCGGCCCACCTGCACCAGGTTCC 1164 Query 39785 GGTCCTCGGCCGGGATGTAGAACACCGGCTTCAACTCCCGGTAGCGCGCTGACTCCTCGT 39844 ||||| | ||| | ||||||||| ||| || ||| |||||||| | |||||||||| Sbjct 1165 GGTCCCGCGACGGCACGTAGAACACGGGCCGCAGCTCGCGGTAGCGGCCCGACTCCTCGT 1224 Query 39845 TGTAACTCCAGCCCACCCTGTGACGCATCCACTCACGGGCCACGAACATGGGGGCCTGGA 39904 |||| || | | | ||| ||||| |||| ||| |||||| || || ||||| | Sbjct 1225 TGTAGG---AGGCGATGCGGTGCCGCATGAACTCGCGGAACACGAAGATCGGCGCCTGCA 1281 Query 39905 CCAGGAAGGTCATCGAGTTGTGCTCGAAGGGGCTGCCGTGCCGGTCCCGCATCAGGTAGT 39964 | |||||||||||||||||||||||| || ||||| ||||| ||||||||||||| Sbjct 1282 CGTAGAAGGTCATCGAGTTGTGCTCGAACGGCGACCCGTGGCGGTCGCGCATCAGGTAGT 1341 Query 39965 TGATCAGGCCGGCGGTCG 39982 |||||||||| |||||| Sbjct 1342 TGATCAGGCCCCCGGTCG 1359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160439479325106