Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_019414.1 Length=51071 Score E Sequences producing significant alignments: (Bits) Value seq59665 271 2e-68 >seq59665 Length=1686 Score = 271 bits (300), Expect = 2e-68 Identities = 410/578 (71%), Gaps = 9/578 (2%) Strand=Plus/Plus Query 39258 CTCACGGGGCCACCCGGCCCTGCTTGTTGAAGGCGGTGTACGTGATGGGCATCAGGTCCG 39317 |||| ||||| | || || | | | ||||||||| || ||| | ||||||||| || | Sbjct 781 CTCAGGGGGCGATGCGCCCGTTCGCGGTGAAGGCGGCGTGCGTCAGGGGCATCAGCTCGG 840 Query 39318 -CGAGGTGGTCCTCCATCTTCTCGGCGACCATCTCGATCTCGCGCTGCGGGAAGGAGGGG 39376 | || |||| || |||| |||||| |||||||||||||||||||||||||| ||||| Sbjct 841 ACCAGCGGGTC-TCGATCTGCTCGGCCACCATCTCGATCTCGCGCTGCGGGAACGAGGGC 899 Query 39377 AACTGAGCGATGGCACTGATGGTGCGGAGTCCGAGGAAGTGCATCAGGCTGCGCGCGTTG 39436 || | || | ||||||| || || ||||| |||||| || ||||| Sbjct 900 GCCTTCGACTCGGGATGCTTGGTGCGCAGCGAGACGAAGTTCATCAGCGCACGGGCGTTC 959 Query 39437 CAGGTGGCGTAGAAG--CTGGTGAAGATCCCGACCGGGAGGACCATGCGGGCCACCTCGC 39494 || |||| | | | || || | | | ||| || || || || |||||||||| Sbjct 960 ATCGTCACGTACATGGACGAGTACAGGTTCAG--CGGCAGCACGATCCGCGCCACCTCGC 1017 Query 39495 GGGCGATGCCGATCTCCAGCATCACCTCGTAGGAGCGGTACGCCTGCTCGTACGCGTCAC 39554 | |||| ||| || |||||| | ||||| ||||||| | || || | | Sbjct 1018 GAGCGACGCCCGCGTCGAGCATCGACCGGTAGGCCTCGTACGCCGCCACGGACTGCTGCC 1077 Query 39555 TCATGGCGGAGAGCGTCACCGCGTACTGCGAGGGCGAGCCGGGCGTGAACTGGTAGGCGC 39614 || |||| | || ||||| |||| | ||| ||| ||||| |||||||| Sbjct 1078 GCACGGCGCCGTCGACCAGCGCGTGCTGCTCGTCGCTGCCCGGCAGGAACTCGTAGGCGC 1137 Query 39615 CGGGCTTGCCCTTCTGCACCAGGTTCCGCTCATGGCCGGGGGCGTAGAAGACGGGGCGGA 39674 |||| |||| ||||||||||||||| || | || ||||||| ||||| || | Sbjct 1138 CGGGGCGGCCCACCTGCACCAGGTTCCGGTCCCGCGACGGCACGTAGAACACGGGCCGCA 1197 Query 39675 GCTGCTTGTAGCGGCCCGACTCCTCGTTGTACGACCAGCCCGAGCGGTGGCGGAAGAACT 39734 ||| |||||||||||||||||||||||| || | | |||||| || | ||||| Sbjct 1198 GCTCGCGGTAGCGGCCCGACTCCTCGTTGTAGGA---GGCGATGCGGTGCCGCATGAACT 1254 Query 39735 CGCGGGCCACGAAGACCGGCGCCTCGACGTAGAAGGTGAACGTGGTGTGCTCGAAGGGGC 39794 ||||| |||||||| |||||||| ||||||||||| | || | |||||||||| || Sbjct 1255 CGCGGAACACGAAGATCGGCGCCTGCACGTAGAAGGTCATCGAGTTGTGCTCGAACGGCG 1314 Query 39795 TGCCGTGCCGGTCCCGCATCAGGTAGTTGATCAGGCCC 39832 ||||| ||||| |||||||||||||||||||||||| Sbjct 1315 ACCCGTGGCGGTCGCGCATCAGGTAGTTGATCAGGCCC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163046536997394