Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq99200 197 3e-45 seq11270 176 8e-39 seq57685 154 3e-32 seq35533 118 2e-21 seq72010 107 4e-18 >seq99200 Length=725 Score = 197 bits (218), Expect = 3e-45 Identities = 316/449 (70%), Gaps = 10/449 (2%) Strand=Plus/Plus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| |||||| || || |||||| ||||| || || ||| ||| |||||||||| Sbjct 208 AGCAGGCAGGCGAAATCTGTGTGCATACCTTCATCACGAGAGATCAGCTCGTTGGAGAAT 267 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 ||||||||||||| || |||| |||||||||||||| | |||||||| || ||| Sbjct 268 GTCAGACCAGGCATGAGACCTCTCTTCTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAG 327 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT-CTT 48303 |||||||||||||| || || ||||| || || | | ||||| || || ||| Sbjct 328 AAGAAGATGCCCTCAACGGCGGCGAATGCCACCAGACGTTGGGCGAAA-CTGCTTTCCTT 386 Query 48304 GTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTAT 48363 || |||||||| | |||||| || |||||||| ||||||||| || || || || Sbjct 387 ATCAGAGATCCATCTCAACGCCCACTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGAT 446 Query 48364 GGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGC-AGCT 48419 || |||||| | || || || || ||| | || | ||||| |||| Sbjct 447 AGCATCGAAGAGGTACTGTTTCTGCTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCT 506 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 |||||| || ||||| | |||||| || ||||||||| || || ||| | | Sbjct 507 ----GTACATTTCGGAGTGGATATTCTCCATCATGATCTGGAAACCATAAAAGCATCGAG 562 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 |||| || ||||| || ||||||||||| | || ||||| ||||| || || | Sbjct 563 CCTCTGGTACTTGCACCTCACCCGAGAATCTCTCGACAAGGTTCTCGTTGACAATACCGT 622 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGT 48568 | || ||||| ||||| |||||||| ||| Sbjct 623 CAGAGGCAGCGAAGAAAGCAAGGACGTGT 651 >seq11270 Length=18388 Score = 176 bits (194), Expect = 8e-39 Identities = 438/659 (66%), Gaps = 16/659 (2%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| ||||||| | ||| || || | || ||| ||| ||||| ||| | Sbjct 5400 AAACTCCCTCTCTATATCCACCGCGTCGCGAACGATCCCCTTCACGCGCTCCTCGCTCAG 5459 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 || ||||||| | | || ||||||| ||| || || || | ||| | ||||||||| Sbjct 5460 CTTCTTGCGCAAGAGAGTG---TAGAGCAGGCACGCGAAATCGCAGTGGAGGCCTTCGTC 5516 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | ||||||||||| | || ||||| | ||| | || ||| ||||| Sbjct 5517 TCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTTTTTAGCCA 5576 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 || || || ||| || |||||||| ||||| || || ||||| ||| |||| Sbjct 5577 AAATATCGCGCAGAAGCTACCGGAGAAGAAAATGCCTTCGACGCAGGCGAAAGCGATGAG 5636 Query 48280 CCTCTCTCCGAAAGAAGCGTTCT-TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCT 48338 |||||| |||| || |||| | | |||||| || ||||| || ||||||| Sbjct 5637 CCTCTCGGCGAACGA----TTCTCCGCCGTCGATCCACCGCAGGGCCCACTCGGCCTTCT 5692 Query 48339 TCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGT 48395 || | ||| || | ||||| || || |||| ||| ||||| ||| | | || Sbjct 5693 TCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTT---CTCGGCCGAGT 5749 Query 48396 CCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGA 48455 || | |||||| ||||| |||||| |||||||| | |||||| || || | Sbjct 5750 CCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCAGAGTGGATATTCTCGATCGCAA 5809 Query 48456 TCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCA 48515 ||||||| || ||||| || | ||||| | || || || || | ||| || ||| Sbjct 5810 TCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACTTGGACCTCCTTCATGAACCT-TCCG 5868 Query 48516 G-CAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGG 48574 | ||||||||| || || || || || || || |||||||| || || || | | | Sbjct 5869 GCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGAGTGACG 5928 Query 48575 AAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACT 48634 || || | |||| || ||| || | |||| ||| ||| | || || || Sbjct 5929 AAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGTGACGTAAGTCGCCGGAGAGATCGACC 5988 Query 48635 TCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || || | |||||||| || || || || |||||||| |||| || ||||| || Sbjct 5989 TCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTCCGGGTA 6047 >seq57685 Length=1792 Score = 154 bits (170), Expect = 3e-32 Identities = 1034/1632 (63%), Gaps = 72/1632 (4%) Strand=Plus/Plus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCC--TTGCC--CCAGCCGTG 212632 ||||||| |||||| |||||||||||||| ||||| || || || || ||||| Sbjct 55 GCAGCCTGGGTGCGGAGATAGTACATGCCAGTCTTGAGTCCGAGTTTCCAACCAGCG--- 111 Query 212633 CATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATG 212692 | ||||||| |||| |||| | || || | || | || || || Sbjct 112 -AAATGCATTGAAGTGA---TCTTGCCC---ATGGTCGGCTCCT--TCATG-------TG 155 Query 212693 TAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGAT 212752 | ||| || |||||| || || || || | | | || || ||||| | | ||| Sbjct 156 AATGTTGAGCGACTGAGATTGATCGATAAAGGCACCACGATCGGCAGCCATCTGAACGAT 215 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | || |||| || |||||| || |||||| ||| | |||||||| || || | | Sbjct 216 TTGTCGCTGGCTGATCTCCCAGACAGTCTTGTAGAGAGCCTTGAGGTCATCGGGAATGTT 275 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGC-AGGCG-CATGTCCTCGTTC 212870 |||||| ||| | || || |||| | | | ||| | | ||||| || | Sbjct 276 AGGGATGCGCTGAATGGATCCGCTGTCGGCGATGA--TGCGATTCTTCATGTTGTCAGAC 333 Query 212871 CAGAGGCCCCTGGTCTCC-AGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 ||||| || | | || | || ||||| || ||||||||| | |||||| || || Sbjct 334 CAGAGACCAC-GATCAACGAGATCCTTGAGAAGCCAAGGGTTGACGACCTGGAACTCGCC 392 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 | | || | | ||||| ||| |||||||| ||||||| || ||||||| || Sbjct 393 GGCCAAGACACGACGAGAGTAAATGTTGGAAGTGTATGGCTCGAAGCACTCGTTGAAGCC 452 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 || ||||| | || ||| || ||||| || || || || ||| || | || || Sbjct 453 CATGATCTGCGATGTCGAGGCAGTCGGCATAGGTGCGACAAGAAGAGAATTTCGGACGCC 512 Query 213050 GTGCTCGCCGATGAG-GCGCCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCG 213107 ||| || |||| || || ||| | ||||||||| ||||| | Sbjct 513 GTGGTCAGCGATCTTAGCCTTGAGAGCGTT--CCAGTCCCAG---------AGGTCAGTG 561 Query 213108 TCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCA-CGGGGCTGCCCTGGTA 213166 |||| ||||||||| | || ||| | | |||| | | || ||||| ||| Sbjct 562 GGAGTCACACCCCACATGTCGTATTG-AAGCTCGCCTTGCGAAACAGGAGAGCCCTCGTA 620 Query 213167 AGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTA 213226 | ||| || ||| | || ||||||| ||||| || || || ||||||| ||| Sbjct 621 GGTCTCGTAAGGACCAAGTTCTTTGGCCAAATCGCACGAGGCAGTGAGAGCAGCGTGGTA 680 Query 213227 GATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT 213286 |||||| || || |||| ||||||| | |||||||| || ||| ||||| Sbjct 681 GATGGTCTCGAAGATCTGGATGTTGAGTTGACGAGCCTCTGGAGAGTCGAATGGCATGCG 740 Query 213287 CATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAG 213346 || ||| |||| || || || || || || | ||||| || | ||| | || Sbjct 741 CAGAGCCAAGAATGCATCCGCGAGACCTTGCACACCAAGACCGATAGGGCGGTGACGCAT 800 Query 213347 GTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 || |||||| |||| ||| || || || ||| || |||||||||||| |||| Sbjct 801 ATTGGACTTGCGAGC-CTCAGGCACTGGATAGTGATTGATGTTGATGATCTTGTTCAGGT 859 Query 213406 TGCGGGTGGCCACTTTGGTGAC---ATGGGCCA---GGTACTCGTGATTGAACACGTAGC 213459 | | | | || | ||| |||| | || | ||| | || ||| | Sbjct 860 TCTTGACGACGACCTGAACGACTTCATGGAGCTTTTGGAAGTCGAAAG---ACTCGTTGG 916 Query 213460 CCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCT 213519 || ||| ||| | ||| || || | |||| ||||||||| || ||||| | Sbjct 917 CCATGTCG---ACATAGGTAGGAAGTGCCAGAGAAGCCAAGTTGCAAACAGCAACCTCAT 973 Query 213520 GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGT 213579 || | || ||||| |||||||| ||||| || ||| || || ||| || |||| Sbjct 974 CAGGAGCAGTATACTCAATGATCTCTGTGCAGAGATTGGAGCTGCGAATGACACCGAGGT 1033 Query 213580 TCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTC 213638 ||| || || | |||||| | ||| | ||| |||||||||||| | || || ||| Sbjct 1034 TCTTCTGATT-GCTTTTGCGGTTGCAAGCATCTTTGTAGAGCATGAAAGGATTGCCAGTC 1092 Query 213639 TCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGACA 213698 ||| ||| | | | || || | ||| || | | || | || | | | ||| Sbjct 1093 TCTGTCTGAGCCTCGAGGATGGCGTACCATAGCTTC-TGTGCGCGAACGGTCTCACGACC 1151 Query 213699 GCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTG 213758 | | | | |||||||| | |||||| | | ||| || | ||| |||| Sbjct 1152 ACGACCCTCCTT--CTCGTACTTGTTGTAGAGAGCCTCGAACTCATCGCCATAGACGTCA 1209 Query 213759 TCCAGTCCCGGACAGGA-TGCGGGACACATGAGGCTCCAGTCCCCGTCAT-CTCTGACTC 213816 | || || || || | |||| ||||| || |||| || || | | ||| ||| | Sbjct 1210 GCAAGACCAGGGCACTCGTTCGGG-CACATCAGCGTCCAATCTCCATTCTGCTC-GACAC 1267 Query 213817 TCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGT 213876 || |||||| || || || | ||| || || ||| ||||| | | | ||| | Sbjct 1268 GCTTCATGAAAAGATCGGGAATCCAGAGTGCATAGAAGAGGTCACGAGCACGGACCTCCT 1327 Query 213877 CCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCA 213936 || || ||| ||||| ||||| || ||| | |||| || |||||||| ||||| | Sbjct 1328 CCTTGCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGA 1387 Query 213937 TGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA 213993 ||| |||||||||||||| | || | ||||| || ||||| || | || Sbjct 1388 GGTACATGGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTAT 1447 Query 213994 TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATA 214052 ||||||||| || || | |||||||| || ||||| ||| || ||||| || | || Sbjct 1448 TGTTGAAGACACGAAGCATTGGTACCAGACCATTGGA-TGTGCCATTGGTGCCGCCAATG 1506 Query 214053 TACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAG 214112 ||||| || | || | | | | | | || ||| ||||| || || | ||| ||| Sbjct 1507 TACGAACCAGTCGCACGGATGCGGTGAACGTTGAACCCGATGCCGCCAGCATTCTTCGAG 1566 Query 214113 ATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTC 214172 ||||| |||||| | | | || || ||| || | |||||||| || ||| || Sbjct 1567 ATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCCTCGATGCTGTCCTCCTTGACGTCG 1626 Query 214173 AGCAAGAAGCAG 214184 | | ||||||| Sbjct 1627 ATGAGGAAGCAG 1638 >seq35533 Length=2598 Score = 118 bits (130), Expect = 2e-21 Identities = 249/364 (68%), Gaps = 13/364 (4%) Strand=Plus/Plus Query 47864 AAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGGAAGGGGTTGGGTGTG 47923 |||||||| ||||| || | || ||||||||| |||||||| ||| || | | Sbjct 2243 AAGAAGTTGGTCTTGCCATTCAGCGAGATGTTGTCCATGAAATCGAATGGACATGTAACG 2302 Query 47924 TTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTAT 47983 || || | ||| || || | | || ||| | || |||||| | |||||||| Sbjct 2303 TTGTAGTGCTTTGTGAGACCGAGGGCGACGAGAAGGCGGTCTGCGACGAATTCGATGTAC 2362 Query 47984 TTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC-GGGCAAAGCCTTTGTGAGAAA 48042 | |||| || ||| ||||||||| | |||| ||| ||||| ||| | ||||| || Sbjct 2363 TGGCACATAAGTGTGGCGTTCATGCCGAGTAGGG-CACAGGGCAGAGCATCAGTGAGGAA 2421 Query 48043 CTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT-GCTTAACGCGGGACTCTGAG---G 48098 ||| | ||| || ||||| || | || | || || || | || || | | Sbjct 2422 CTCTTGCTCGATGGCGACGGCCTCTGTGATGATGTCGCGTA---CGAG-CTGTGTGTCGG 2477 Query 48099 GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGT 48158 | || || ||||||| | ||||||| ||| || ||||| |||||| ||| |||| Sbjct 2478 GCTTCTTCTGCAGGTGTGAG---TAGAGCAAGCAAGCGAAGTCAGTGTGCATGCCCTCGT 2534 Query 48159 CCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCC 48218 | || ||||||| ||||||||||| |||||||||||||| || | || ||||||| Sbjct 2535 CACGAGAGATGAGCTCGTTGGAGAAGGTGAGACCAGGCATGAGACCACGCTTCTTGAGCC 2594 Query 48219 AGAA 48222 |||| Sbjct 2595 AGAA 2598 >seq72010 Length=1221 Score = 107 bits (118), Expect = 4e-18 Identities = 191/278 (69%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 48401 ACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGG 48460 ||||||||| || ||| | ||||||||||||||| | ||||| || ||||||| Sbjct 999 ACATAGGTATCGATCAGGAGAGAGTACATCTCAGAGTGGATGTTCTCGATCATGATCTGG 940 Query 48461 AACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGA 48520 || || |||||| | || || || || ||||| ||||||| ||| |||| Sbjct 939 AAACCATAGAAGCAACGAGCTTCTGGTACTTGAACTTCACCTGAGAATCGCTCGAGCAAG 880 Query 48521 TTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGG 48580 ||||| || || || ||||| || ||||| |||||||| || || || | || | Sbjct 879 TTCTCGTTTACGATACCATCGGAGGCAGCGAAGAAGGCGAGAACGTGAGAGATAAAGTAA 820 Query 48581 CGCTCGTTGTGGGTGAGA---GCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 ||||| | | | | ||| |||||| | || | || ||| || || || ||| Sbjct 819 CGCTCATCATCGTTAAGACGGTTGTTCCAGTCGTGAAGATCCTTGGATAGATCGACCTCT 760 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 || ||||||||||||| || |||||| |||||||| Sbjct 759 TCAGCAGTCCAGAAGGATGCTTCTGCTTTCTTGTACAT 722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929977268309760