Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq35216 154 6e-33 seq85577 114 5e-21 seq65589 96.9 1e-15 seq116439 86.0 3e-12 seq33621 82.4 3e-11 >seq35216 Length=2640 Score = 154 bits (170), Expect = 6e-33 Identities = 261/369 (71%), Gaps = 7/369 (2%) Strand=Plus/Minus Query 54173 CGCTGGATTTGGACGGACACGAAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAAC 54232 |||||| | ||| |||| | | || || |||||||| | | |||||| || | Sbjct 1353 CGCTGGGTGTGGCAGGACGCCGATCGGGCGGACCGGCTGTCCCGCATCTACAATGACCGC 1294 Query 54233 TTCAACAACATCGCCCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCG 54292 ||||||||| | | ||||| |||||||| |||||| ||||||||||| ||| Sbjct 1293 TTCAACAACCTGGTGCCGCGGTCCTTCGACGGGAGCCACCTGCAGCTGCCGGGCGCGTC- 1235 Query 54293 CTGCG-CTTCGACCTGCGCGAGAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGGA-AG 54350 | ||| || | |||||| |||||||||| | |||||||| | || |||| | | Sbjct 1234 CAGCGTGATCCAGATGCGCGGCCACCAGAAGCGGGTGATCTGGCGGGTCA-TCAGCACGG 1176 Query 54351 GCGATATGTACCTCGCGCACGCTGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACCG 54410 || | ||| |||| ||||| |||||||| || ||||| ||| | ||| |||| | Sbjct 1175 GCACGACCTACATCGCCCACGCGGTCGGCGCCGGGAAGACCTTCTCCATGGCCGCGGCGA 1116 Query 54411 GCATGGAGGAGCGCCGGCTGGGCCTGTCCAACAAGCCGATGTATGCGGTGCCGAACCACA 54470 ||||||| |||||||||| |||||| | |||| | ||| | ||||||| ||| Sbjct 1115 TCATGGAGCAGCGCCGGCTCGGCCTGGTGACCAAGGCCATGATGGTGGTGCCG-GGCACT 1057 Query 54471 TGCTCGCGCAGTTCGCG-CGCGAGTTCCTTGAGCTGTACCCGGCCGCGAACATCATGGTC 54529 || |||||| || | ||||||||||| ||| |||||| ||| | ||| ||||| Sbjct 1056 GCCTGGCGCAG-GCGAGCCGCGAGTTCCTGCTGCTCTACCCGAACGCCCAGATCCTGGTC 998 Query 54530 GCGGACGAG 54538 ||||||||| Sbjct 997 GCGGACGAG 989 Score = 114 bits (126), Expect = 5e-21 Identities = 261/383 (68%), Gaps = 10/383 (3%) Strand=Plus/Minus Query 54863 CACGAGTTCCGCAAACTCGACTTCGCGACGCAGCAGGGCAA-CATCAAGGGCATCGACCC 54921 || |||||| | || || |||||| || || || ||| | | | || || ||| ||| Sbjct 670 CAGGAGTTCAGGAAGCTGAGCTTCGCCAC-CAACATGGCCAGCCTGAAAGGGATCAGCCC 612 Query 54922 GGCCGGCTCGCAACGCGCGATGGACCTGTTCATGAAGGCGCAGTACCTGCGCTC-GAAGA 54980 || ||| ||||| ||||| |||||| | | ||| ||| ||| | ||| | || Sbjct 611 GGACGGTTCGCAGCGCGCCTGGGACCTCTACGCCAAGTCGCGCTACAT-CGCGCAGACCC 553 Query 54981 AGCCGGGCCGCGCGCTCGTCGCCGCGTCGGGCACGCCGATCACGAACACGATGGGCGAGC 55040 |||||| || || || |||||||||||||||||||| ||||| ||||||||| Sbjct 552 AGCCGGCGCGGAACCTGATCCTGGCGTCGGGCACGCCGATCACCAACACCATGGGCGAGA 493 Query 55041 TGTTCACGGTGCAACGCTTCTTCCAGCCCGAGCAGATGGCCGAGGACGGTCTGGACACCT 55100 |||||| |||| |||||| | ||||| || | ||| ||| ||| ||| || | Sbjct 492 TGTTCAGCCTGCAGCGCTTCATGCAGCCGGACGTGCTGGAGGAGCGCGGCCTGCACGAGT 433 Query 55101 TCGACGCGTGGGC--GAACCAGTACGGCGACGTCGTGGCGGGCTTCGAGCAGAACGCGGC 55158 ||||||| ||||| ||| | ||||||| ||| ||| | |||| | | || | Sbjct 432 TCGACGCCTGGGCCTCGACC--TTCGGCGACACGGTGACGGAACTGGAGCTGCAGCCGTC 375 Query 55159 GGGCGGCTATGAAGTCGTCAGCCGCTTCGCGAAGTTCCAGAACGTGCCGGAGCTGATGCG 55218 ||| ||| | || | || |||||||| ||| |||||| |||| ||||| || Sbjct 374 CGGCAACTACCAGCCGGTGACGCGGTTCGCGAACTTCGTCAACGTGGCGGACCTGAT-CG 316 Query 55219 CCGCG-TGCGCTCGTTCATGGAC 55240 || | | |||||| || |||| Sbjct 315 CCATGTTCCGCTCGGTCGCGGAC 293 >seq85577 Length=924 Score = 114 bits (126), Expect = 5e-21 Identities = 217/307 (71%), Gaps = 22/307 (7%) Strand=Plus/Minus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||||||||| |||||| |||||||||||||||| ||| || ||| | |||| ||| Sbjct 794 CGTCAACAAGGTCATCATCGTCGGCAATCTCGGGCGCGATCCCGAATCGCGCTCGTTCCA 735 Query 9764 GAGCGGCGACGCAA--TCTCCAACATCCGCCTCGCGACGACCGA-TCGTTACAAGGACAA 9820 || ||||| |||| || ||| | ||| ||||||| | ||| ||| | |||||| Sbjct 734 GAACGGCG--GCAAGGTCGTGAACCTGCGCATCGCGACCAGCGAGTCG-TGGAAGGAC-- 680 Query 9821 AGCCA--GCGGCGACTTCAAAG-AAGTGACCGAGTGGCACCGCGTCGC---CTTCTTCGG 9874 || | |||||| ||| | || |||||| ||||| ||||| |||| || Sbjct 679 CGCAATTCCGGCGAGCGCAAGGAAAAAGACCGAATGGCATTCGGTCGCGATCTTCAACGA 620 Query 9875 CCGCCTCGCCGAGATCGTCGACGAGC---ACCTGCGCAAGGGCGCATCGGTCTACATCGA 9931 |||||||| | ||||| ||||| |||||||||||| | ||| |||||||| Sbjct 619 AGGCCTCGCC---AACGTCGCCGAGCGTTTCCTGCGCAAGGGGTCCAAGGTTTACATCGA 563 Query 9932 GGG-GCGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCG 9990 ||| |||| | | || || || ||||||||||| |||||||| |||| |||| Sbjct 562 GGGCGCGC-TGCAGACCCGCAAATGGCAGGATCAGCAGGGCCAGGACAAGTACAGCACCG 504 Query 9991 AGATCGT 9997 ||||||| Sbjct 503 AGATCGT 497 >seq65589 Length=857 Score = 96.9 bits (106), Expect = 1e-15 Identities = 200/293 (68%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||||||||| || || || || ||||||||||| ||||||||| | |||| ||| Sbjct 104 CGTCAACAAGGTGATTCTGGTGGGCAATCTCGGGCGCGACCCGGAGATCCGCCGCCTCGG 163 Query 9764 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGA-TCGTTACAAGGACAAAG 9822 ||||| | ||| |||| | || ||||||| | || ||| | |||||||| | Sbjct 164 CTCGGGCGATCCGGTCTGCAACCTGCGGATCGCGACCTCGGAGTCG-TGGAAGGACAAGG 222 Query 9823 CCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCAC-CG--CGTCGCCTTCTTCGGCCGCC 9879 || |||||| ||| || ||||||||||||| || ||| || | || | || Sbjct 223 CCTCCGGCGAGCGCAAGGAGAAGACCGAGTGGCACTCGGTCGTGATCTACAACGACAACC 282 Query 9880 TCGCCGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCGGTCTACATCGAGGGGCGCA 9939 | || | | | ||| || |||||||||||||| | |||||||||||| || | Sbjct 283 TGTCCCGGGTGGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACATCGAAGGTCAGT 342 Query 9940 TCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAG 9992 | | || ||||||||| || || |||||| || ||||| |||||| Sbjct 343 TGCAGACCCGGAAGTGGACCGACCAGTCCGGCGTCGAGAAGTACACCACCGAG 395 >seq116439 Length=532 Score = 86.0 bits (94), Expect = 3e-12 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 56006 CGCAAGGCGCGGTTCATCGAACAGGCCCTCAACGGCGA-CGACAGCGTGCGCTCGCTCGA 56064 |||||||||||||||||||| || || |||||| || | | ||| | | || Sbjct 499 CGCAAGGCGCGGTTCATCGAGGCCGCACTGGGCGGCGATCGGTCG-ATCCGCCGGTTGGA 441 Query 56065 GGACGTGTCTGA-AGCGTCGGC--GTTCGACATGGCCGCCGCGCTGGCGTCGGGCGACGA 56121 ||||||| | || | || | || ||||| ||||||| || ||||| ||||||||| | Sbjct 440 GGACGTGGCCGACACCGCCAGCCAGTTCGCCATGGCCAAGGCCCTGGCCTCGGGCGACCA 381 Query 56122 GCGCTATCTGAAGATGGCCGGCCTGAAGGCCGACGTCGAGCGCCTGGAGCGTCTGAGCTA 56181 |||| || ||| ||| || ||| | ||||| | | |||| ||||||| ||| | Sbjct 380 GCGCCTGATGCAGAAGGCGGGGCTGGAAGCCGAGTTGGCGCGCATGGAGCGGCTGCGGGC 321 Query 56182 CGCGCACCACGACGACCAGAAC 56203 || ||| |||||||||| || Sbjct 320 GGCACACTTCGACGACCAGCAC 299 >seq33621 Length=2876 Score = 82.4 bits (90), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 8765 CGTGGACGCAGAACGACGGCGAAGCGATGGGGCAGGAAAAGTTCGCTCAGTTCATCGAGC 8824 |||||||| ||||||||||||| | | |||||| ||||||| ||||| ||||| Sbjct 185 CGTGGACGAAGAACGACGGCGAGTTCCTCGCGCAGGAGGAGTTCGCGGAGTTCGCCGAGC 244 Query 8825 GCAACCTGCTCGACATCGCGGCGCCGACTGGCGCGGAAATGCTGGAGCTCGC--AACGAG 8882 | | | |||| | || |||| | ||| || | || |||||||| ||| Sbjct 245 TCCGCGCGGCCGACGTGCGGGAGCCGTCCCCCGCCGACCTCCTCGAGCTCGCGCAACA-- 302 Query 8883 CTTCCAGGCGAAGAAGGGCGTCAACTTCGCCAGCGGCACGAAGCTCCAGAACGGTCAGAC 8942 | || | || ||||||||| | |||| ||| | | ||| ||| |||| ||||| Sbjct 303 CCTCACGATGACGAAGGGCGTGCAGTTCGAGTCCGGGAAGCGGCTGCAGGACGGGCAGAC 362 Query 8943 CCAGCTCGTCTACGAGGAGACGATTCAGGCGAAGGCCGGCGAGAAGGGCCAGCTC 8997 |||||||||||| |||||| | | || ||||| ||| ||||||| | ||| Sbjct 363 GCAGCTCGTCTACAAGGAGA-----CCGTCG-AGGCCCGCGGGAAGGGCGACCTC 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200993825094477