Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq65532 95.1 2e-14 seq115916 91.5 2e-13 seq106637 86.0 1e-11 >seq65532 Length=1432 Score = 95.1 bits (104), Expect = 2e-14 Identities = 59/62 (95%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 |||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1021 GTAGCTCAGTTGGT-TAGAGTGCCGGCCTGTCACGCCGGAGGTCGCGGGTTCGAGCCCCG 1079 Query 169793 TC 169794 || Sbjct 1080 TC 1081 >seq115916 Length=538 Score = 91.5 bits (100), Expect = 2e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 169732 TGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCC 169791 |||||| |||||||| ||| | |||||||||||||||||||||||||||||||||| ||| Sbjct 88 TGTAGCGCAGTTGGT-TAGCGCGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCC 30 Query 169792 GTCAG 169796 ||||| Sbjct 29 GTCAG 25 >seq106637 Length=636 Score = 86.0 bits (94), Expect = 1e-11 Identities = 57/62 (92%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 169733 GTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGCCCCG 169792 ||||| |||||||| ||| | |||||||||||||||||||||||||||||||||| |||| Sbjct 355 GTAGCGCAGTTGGT-TAGCGCGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCG 297 Query 169793 TC 169794 || Sbjct 296 TC 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 776333461484400