Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq10846 102 7e-17 seq12926 93.3 4e-14 seq9176 93.3 4e-14 seq50277 89.7 4e-13 seq16751 89.7 4e-13 seq11477 89.7 4e-13 seq58530 84.2 2e-11 seq3441 82.4 6e-11 >seq10846 Length=19378 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || ||||||||||| || || || Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || ||| ||||||||||| | || || || Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || ||||| ||||| || ||||||||| | ||| | || ||||| || Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| || || || |||||| |||| | |||| |||||||| || Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGAAT 11273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || || || || || ||||| ||||| ||| || ||| ||| Sbjct 11047 AATGCAGATTTTCGTTAAGACCTTGACTGGTAAGACCATAACCTTGGAGGTTGAAAGTTC 10988 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || ||||| | || ||||| |||||| | || ||||| Sbjct 10987 TGATACAATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGAATTCCTCCAGATC 10929 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| |||||||| | |||||| | ||| |||| ||||| | Sbjct 10928 AGCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACA 10869 Query 28732 ACATTCAAAAAGAATCTACTCTGCAC 28757 | || ||||| || |||||||||||| Sbjct 10868 ATATCCAAAAGGAGTCTACTCTGCAC 10843 >seq12926 Length=15191 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||| || |||||||| ||| || ||| Sbjct 527 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 468 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | | ||||| || ||| ||||| || || | ||| || Sbjct 467 CTCCGACACCATAGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGA 408 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 || ||||| || ||||| || || ||||||||||| || | || | |||||||| Sbjct 407 CCAGCAGAGGCTCATCTTCGCCGGTAAACAATTGGAGGACGGTCGCACCCTCGCCGATTA 348 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| || ||||| |||||||| |||| || || | || ||||| || Sbjct 347 TAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGGTAT 294 >seq9176 Length=23001 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || || | ||| ||| |||||||| || || ||||| ||||| ||||||||| Sbjct 19880 GACAAGGAAGGTATCCCCCCAGACCAACAGAGGCTGATTTTTGCTGGCAAGCAATTGGAA 19939 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||| | |||| | || ||||| ||||| ||||| || || || || ||| |||| || Sbjct 19940 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTGGTTTTG 19999 Query 28767 AGATTACGAGGAGG 28780 ||| | || ||||| Sbjct 20000 AGACTTCGGGGAGG 20013 >seq50277 Length=901 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||| | || ||||| |||||| | ||| ||| || ||||| ||||| ||||| Sbjct 833 AAGCAAAGATTCAG-GACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTTATTTTTGCA 775 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 |||||||| | |||||| | ||| |||| ||||| || || ||||| || |||||| Sbjct 774 GGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAATATCCAAAAGGAGTCTACT 715 Query 28752 CTGCAC 28757 |||||| Sbjct 714 CTGCAC 709 >seq16751 Length=10463 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/126 (76%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||| | || ||||| |||||| | ||| ||| || ||||| ||||| ||||| Sbjct 5984 AAGCAAAGATTCAG-GACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTTATTTTTGCA 5926 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 |||||||| | |||||| | ||| |||| ||||| || || ||||| || |||||| Sbjct 5925 GGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAATATCCAAAAGGAGTCTACT 5866 Query 28752 CTGCAC 28757 |||||| Sbjct 5865 CTGCAC 5860 >seq11477 Length=17588 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||| || |||||||| ||| || ||| Sbjct 517 AAAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAAACCATCACCCTGGAGGTGGAGAG 458 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || ||||| || ||| ||||| || || | ||| || Sbjct 457 CTCCGACACCATAGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGA 398 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 || ||||| || ||||| || || ||||| || || || | || | |||||||| Sbjct 397 CCAGCAGAGGCTCATCTTCGCCGGAAAACAGTTAGAGGACGGTCGCACCCTCGCCGATTA 338 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||||| || ||||| |||||||| |||| || || | || ||||| || Sbjct 337 TAACATTCAGAAGGAATCGACTCTGCATTTGGTGTTGAGGCTCCGTGGAGGTAT 284 >seq58530 Length=1747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || | || || || || ||||| || ||| ||| Sbjct 89 ATGCAGATATTCGTGAAGACTCTGACTGGGAAGACGATTACTCTGGAGGTGGAGAGTTCT 148 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || | ||| || || || || |||||| | || ||||| Sbjct 149 GATACGATCGACAATGTGAAGGCGAAGATTCAAGATAAGGAGGGAATCCCTCCGGATCAG 208 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || || |||||||| ||| | ||| | || ||||||||| Sbjct 209 CAGAGACTGATCTTTGCTGGGAAGCAATTGGAGGATGGGAGGACTCTCGCTGATTATAAC 268 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || || ||||| ||| Sbjct 269 ATTCAAAAGGAGTCCACTCTTCAC 292 >seq3441 Length=50379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || || || || ||||| || || ||| ||| ||| Sbjct 14374 AATGCAAATTTTTGTGAAGACCTTGACTGGAAAAACTATAACATTGGAAGTTGAAAGTTC 14315 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||| || ||||||||||| | || || || Sbjct 14314 TGATACTATTGATAATGTCAAGGCAAAGATACAAGACAAAGAGGGGATCCCTCCGGACCA 14255 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| ||||| || |||||||| ||| | || |||||||| Sbjct 14254 GCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTTGCTGATTATAA 14195 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| || || ||| |||| Sbjct 14194 TATCCAAAAGGAATCGACACTTCACTTGGT 14165 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| || || | || || |||||||| ||| || |||| || Sbjct 14830 AATGCAGATATTTGTCAAGACCCTGACTGGAAAAACCATCACCTTGGAGGTGGAAAGCTC 14771 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| |||||| ||||||||||| | || ||| || Sbjct 14770 GGATACCATTGATAATGTCAAGGCAAAAATACAAGACAAAGAGGGTATCCCACCAGACCA 14711 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| | || ||||| ||||| || | |||||| | || | || || ||||| Sbjct 14710 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTTGAAGATGGTCGTACCCTTGCAGACTATAA 14651 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| ||||| || ||||| || ||| |||| Sbjct 14650 CATCCAAAAGGAGTCTACCCTCCACTTGGT 14621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424712191665231