Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq57685 302 5e-77 seq78534 104 3e-17 seq64904 87.8 2e-12 seq588 87.8 2e-12 >seq57685 Length=1792 Score = 302 bits (334), Expect = 5e-77 Identities = 1129/1746 (65%), Gaps = 47/1746 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||| ||||||| ||||| | ||||| || || || || || || ||| | Sbjct 1790 CCTCAGCAGATGATCATGCGTGTCGCCGTTGGCATTCATGGCGAGGATATCGAGGCTGCC 1731 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | ||||| | | ||| |||| ||||| | || || ||||| Sbjct 1730 ATCGAGACCTACAACTACATGTCAAACAAGTAC-TTCACGCACGCTTCGCCGACACTCTT 1672 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || ||||||||| || | || ||| || || |||||||| |||| | ||||||||| Sbjct 1671 CAGTGCTGGTACTCCCAACCCACAGCTGGCCTCCTGCTTCCTCATCGACGTCAAGGAGGA 1612 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAA--ATCTCAAAGTGGGCT 75448 | ||| | |||||||| | || || | | || ||||| ||||| ||| ||| Sbjct 1611 CAGCATCGAGGGTATCTACGATACACTCAAGACCTG--CGCAATGATCTCGAAGAATGCT 1554 Query 75449 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 75508 || || || ||| | || | || | | || | | || ||| | || || Sbjct 1553 GGCGGCATCGGGTTCAACGTTCACCGCATCCGTGCGACTGGTTCGTACATTGGCGGCACC 1494 Query 75509 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 75568 ||||| ||| ||||| | | ||||||||||| || || ||| || || || ||| Sbjct 1493 AATGGCACATCCAATGGTCTGGTACCAATGCTTCGTGTCTTCAACAATACTGCTCGTTAT 1434 Query 75569 GTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || | |||| || ||||| | || || | || | ||| | || |||||| Sbjct 1433 GTCGACCAAGGTGGCAACAAGCGTCCC---GGCGCCTTTGCCATGTACCTCGAGCCATGG 1377 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || || ||| || | | ||||| || | || ||||| || | || |||| || | Sbjct 1376 CACGCTGATGTCTTCGCCTTCCTGGATCTTCGCAAGAACCACGGCAAGGAGGAGG-TCCG 1318 Query 75683 TG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 || | | || ||||| | | || |||||||| || |||||||||||||| || ||| | Sbjct 1317 TGCTCGTGACCTCTTCTATGCACTCTGGATTCCCGATCTTTTCATGAAGCGTGTCGAGCA 1258 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | ||| | ||| | || | || || || || || ||||| | |||| || Sbjct 1257 GAATGGAGATTGGACGCTGATGTGCCCGAACGAGTGCCCTGGTCTTGCTGACGTCTATGG 1198 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 || ||||| || || ||||||| ||||| || |||||||| | | || ||| || Sbjct 1197 CGATGAGTTCGAGGCTCTCTACAACAAGTACGAGAAGGAGGGTCGTGGTCGTGAGACCGT 1138 Query 75862 ACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 | | | | || | | ||| | || || ||| | | ||||| |||||||| | || | Sbjct 1137 TCGCG-CACAGAAGCTATGGTACGCCATCCTCGAGGCTCAGACAGAGACTGGCAATCCTT 1079 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 ||||| ||||| |||||||| ||| || || || || ||||| | || || Sbjct 1078 TCATGCTCTACAAAGATGCTTGCAACCGCAAAAGCAATCAGAAGAACCTCGGTGTCATTC 1019 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 ||||| ||||| ||||| || || | ||||| || | | |||||| ||||||| Sbjct 1018 GCAGCTCCAATCTCTGCACAGAGATCATTGAGTATACTGCTCCTGATGAGGTTGCTGTTT 959 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC--AATGAAGAGACTCGCACTTTTGA 76098 |||| ||||| || | || ||||| | |||||| ||| | || | |||| || Sbjct 958 GCAACTTGGCTTCTCTGGCACTTCCTACCTATGTCGACATGGCCA-ACGAG-TCTTTCGA 901 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 | |||| || |||||| || || | || ||| || || ||| |||| | Sbjct 900 CTTCCAAAAGCTCCATGAAGTCGTTCAGGTCGTCGTCAAGAACCTGAACAAGATCATCAA 841 Query 76159 CAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTAT 76215 || ||| ||||| || |||| || || ||||| |||||||| ||| | ||||| Sbjct 840 CATCAATCACTATCCAGTGCCTGAG---GCTCGCAAGTCCAATATGCGTCACCGCCCTAT 784 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TATTTTGTGCCGCTACGCATTTGATT 76274 ||| | ||||| |||||||||||||||| ||| | | || ||| |||| || | Sbjct 783 CGGTCTTGGTGTGCAAGGTCTCGCGGATGCATTCTTGGCTCTG-CGCATGCCATTCGACT 725 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 | || || | | || | ||||| || ||||| || ||||| | || Sbjct 724 CTCCAGAGGCTCGTCAACTCAACATCCAGATCTTCGAGACCATCTACCACGCTGCTCTCA 665 Query 76335 AGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCG 76394 || || || ||||| ||| | ||| | || ||||| | ||||| ||||| | Sbjct 664 CTGCCTCGTGCGATTTGGCCAAAGAACTTGGTCCTTACGAGACCTACGAGGGCTCTCCTG 605 Query 76395 CGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGA 76452 || ||||| | |||||| | || ||||||| |||| || | || | || || Sbjct 604 TTTCGCAAGGCGAGCTTCAATACGACATGTGGG-GTGTGACTCCCA-CTGACCTCTGGGA 547 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 |||| | | |||||||| ||| || | || | || || |||| | | || Sbjct 546 CTGGAACGCTCTCAAGGCTAAGATCGCTGACCACGGCGTCCGAAATTCTCTTCTTGTCGC 487 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 ||| ||||| || ||||| || | || ||| |||| || || ||||| || ||||| Sbjct 486 ACCTATGCCGACTGCCTCGACATCGCAGATCATGGGCTTCAACGAGTGCTTCGAGCCATA 427 Query 76573 CACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCA 76632 ||| | ||||| ||| | | | | || || ||||| | |||||| Sbjct 426 CACTTCCAACATTTACTCTCGTCGTGTCTTGGCCGGCGAGTTCCAGGTCGTCAACCCTTG 367 Query 76633 CCTCGTCAATGACCTCAAGAAGAT--TGGTCTCTGGTCCAAGGATATGAAGGATCTCAT- 76689 || |||| || ||| | ||| |||||||||||| | | |||||| ||| ||| Sbjct 366 GCTTCTCAAGGATCTC--GTTGATCGTGGTCTCTGGTCTGACAACATGAAGAATCGCATC 309 Query 76690 ---GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAA 76746 | || ||| || |||||||| ||| | | || || ||||| ||||| Sbjct 308 ATCGCCGACAGC----GGATCCATTCAGCGCATCCCTAACATTCCCGATGACCTCAAGGC 253 Query 76747 TCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCG 76806 ||||||| || || ||||| |||| | | | || || | ||||| || ||||| Sbjct 252 TCTCTACAAGACTGTCTGGGAGATCAGCCAGCGACAAATCGTTCAGATGGCTGCCGATCG 193 Query 76807 TGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC 76866 |||| ||| || |||||| ||| | || | |||| | || || ||| Sbjct 192 TGGTGCCTTTATCGATCAATCTCAGTCGCTCAACATTCACATGAAGGAGCCGACCATGGG 133 Query 76867 CAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 |||| || |||| |||||| | | ||||||| || ||||| || || |||||||| Sbjct 132 CAAGATCACTTCAATGCATTTCGCTGGTTGGAAACTCGGACTCAAGACTGGCATGTACTA 73 Query 76927 TCTCCG 76932 |||||| Sbjct 72 TCTCCG 67 >seq78534 Length=1057 Score = 104 bits (114), Expect = 3e-17 Identities = 365/557 (66%), Gaps = 21/557 (4%) Strand=Plus/Plus Query 75533 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAG 75592 || ||||| || || ||| || ||| || || || || |||||| | ||| | || Sbjct 128 CCTATGCTGCGAGTCTTTGACAACACTGCTCGGTACGTCGATCAAG-GCGGCAACAAGAG 186 Query 75593 G---GGT-CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA 75648 ||| || |||| | ||| | || |||||||| || ||| | | |||| || | Sbjct 187 ACCAGGTGCCTTCGCCATTTACCTTGAGCCATGGCACGCTGATGTATTCGAGTGGCTCAA 246 Query 75649 GTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT-AGAGATCTCTTTTCATCCCTGT 75707 || || ||||| || | ||||| | || | | ||||||||||| | | || | Sbjct 247 CTTGAGAAAGAACCACGGCAAAGAAGAAG-TCAGAGCCAGAGATCTCTTCTACGCTCTCT 305 Query 75708 GGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTC 75767 ||||||| ||||| ||||||||||| || || || || | ||| | || | |||| Sbjct 306 GGATTCCTGACCTATTCATGAAGCGAGTAGAAAAGAATGCAGACTGGACACTGATGTGTC 365 Query 75768 CAGACAAGGCA---CCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACA 75824 | ||| | | || ||| | || ||| || || || || || ||| | | || Sbjct 366 C---CAATGAATGTCCTGGTTTGTCTGACTGCTACGGCGACGAATTCGAGGCCTTGTTCA 422 Query 75825 CAAAGTATGAAGAGG-AGGGTAGAGCCAATGC--GACTGTACCAGCCGCCGATGTT-TGG 75880 | || ||||| ||| ||| || ||| || ||| | || | | || | ||| Sbjct 423 CCAAATATGAGAAGGCAGGAAAGGGCC---GCCAGACAATTA-AGGCTCAGAAACTGTGG 478 Query 75881 AAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCT 75940 | || || | | | ||||| |||||||| | |||| ||||| ||||| ||||| Sbjct 479 TATGCCATCATTGAGGCTCAGACTGAGACTGGCAATCCATTCATGCTGTACAAAGATGCC 538 Query 75941 TGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACG 76000 || ||| ||||| ||||||||||| ||||||| |||||| || || || ||||| Sbjct 539 TGCAACCGCAAGAGCAACCAAAAGAACCTGGGAACGATCAAGTCATCCAACCTCTGCACC 598 Query 76001 GAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCC 76060 ||||| | ||||| || | | ||||| || ||||||||| | || || || | Sbjct 599 GAAATCATTGAGTATACTGCTCCAGATGAAGTCGCAGTTTGCAATCTCGCGTCTGTCTCA 658 Query 76061 CTTCCAAAGTATGTCAA 76077 || ||| | |||||| Sbjct 659 CTGCCAGCATTTGTCAA 675 >seq64904 Length=1455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 27922 TTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACT 27981 ||||| |||| ||||||||||||||| ||||||| | ||| || ||||||||||| Sbjct 912 TTGAAAAGAAGCACTTTGACTTCACCTCTATAGTCAGCATCTATGACACCCGCACCTGTA 853 Query 27982 TGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATAC 28032 | || | ||| || ||||||||| |||| |||||| | ||||||||| Sbjct 852 TCAAGAAAATGTTTGGAAGCGAGACCTGATCTTGGTGCGATGCGACCATAC 802 >seq588 Length=109198 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||| | || |||||||||| ||||||||||||||| | || || | | || | Sbjct 12729 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCTTACCTATTGAAGG-T 12787 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| || ||| ||||||| ||| |||| | | || || || Sbjct 12788 CCAAGGGAAGGTTGTAGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGAATTCA 12847 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | ||| || |||||||| || | | |||||| | | |||||| || | ||||| Sbjct 12848 CAAGGATGATATTGATTCAGTTATCAAAACATACCATATGATGTCTCAGCGGTGGTTCAC 12907 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| || | || || || |||||||| || ||||| || || || Sbjct 12908 TCATGCTTCTCCCACTCTTTTCAATGCAGGGACACCTAGGCCTCA 12952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595573410796320