Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_020853.1
Length=56958
Score E
Sequences producing significant alignments: (Bits) Value
seq69607 190 7e-44
>seq69607
Length=1286
Score = 190 bits (210), Expect = 7e-44
Identities = 419/622 (67%), Gaps = 32/622 (5%)
Strand=Plus/Plus
Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470
||||||||| | |||| ||| | || || || | || || |||||||| ||||||| |
Sbjct 540 TCGGCATAGGCGCGGATCTCGTATTGCGCGTGCGCGTCCGCGCGCAGGCGGAGGAAGTTG 599
Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530
|| |||||||| ||||| ||||||| ||||| || |||||| |||| || || ||||
Sbjct 600 AACAGGTTGTGCAGGTCCGTCTTCCAGTACCACTGCGTGTAGGTGTTGAGCGTCAGGTTC 659
Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGTCCTGAC---------------CGTCATCGCTG 44575
|| ||||| || ||||| || | ||| |||||| || | ||| |
Sbjct 660 ATCCGGGCGAGCTCGCGCGCGA-GCC--CCTGACGCTCCGGCTCGCCTCCGCCTTCGTTC 716
Query 44576 ATCATCTCTTCATA-GTGATCATAGGCGTTCTGG---GCGTCGTTCATCAGGTAGTGTAG 44631
| |||| || | || || | ||| || ||||| | |||| || ||
Sbjct 717 AACATC----CAGATGTAGTCGCGGTAGTTGCGGCCCGCGTCCTCGCGCAGGAGGTCGAG 772
Query 44632 GACCCGCTGAGCCTCAGCCCCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTT 44691
|| ||| |||||| | ||||| || ||| | ||||||||||| | ||| |
Sbjct 773 CACGCGCACAGCCTCCTCGCCCTGGAGCACAC---CGTCGCGGCCCTGGCGGTTAGACGC 829
Query 44692 CGACTGGGATGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATG-ATCGAAT 44750
||||| | || | | || |||||||||||||| | | | | | ||| |
Sbjct 830 AGACTGCGCGGCCAATTGCGCCGGTTCCGGGATGTAGAACTC-CTGGTCGAGCACCGAGT 888
Query 44751 AGCGGGCTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAA 44810
||||||| || ||||| || ||| ||| || ||||| |||||||| || |||||||| |
Sbjct 889 AGCGGGCCGAATATTCGTTGACGCTGGAGGTGCGGTGGCGGATCCACTGCCGGGCCACGA 948
Query 44811 ACACGGGCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAAT 44870
| | ||||| || || || || |||||| || ||| || || ||| ||||| |
Sbjct 949 AGATCGGCAGCTTCACGTGCAGCTTGATCGAGCACATCTCGAAGGGCGTGGAATGCCAGT 1008
Query 44871 GGCGCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCTTGGTGCCCTGACCGT 44930
| ||||| ||||||||||| || | | ||||| |||||| ||||||||| | ||||
Sbjct 1009 GCCGCATCAGGTAGCGGATCAGCCCCCTGTCCTCGCTGACCTGCTTGGTGCCGCG-CCGT 1067
Query 44931 AGGATACGCGGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGA 44990
|||| || || || ||| || | || | || |||||||||||||| ||||
Sbjct 1068 AGGACACCCGCGCGGCCTGCACCACGGCTGCATCGTCGCCCATGTAGTCGACGACGCGGA 1127
Query 44991 CAAAGCCATGATCTAGGACCGG 45012
||||| ||||| || || ||
Sbjct 1128 TGAAGCCGTGATCGAGCACGGG 1149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 181855052336560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |