Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_020853.1 Length=56958 Score E Sequences producing significant alignments: (Bits) Value seq69607 190 7e-44 >seq69607 Length=1286 Score = 190 bits (210), Expect = 7e-44 Identities = 419/622 (67%), Gaps = 32/622 (5%) Strand=Plus/Plus Query 44411 TCGGCATAGACACGGACCTCTTTCTGGGCATGTTCATCGGCCCGCAGGCGCAGGAAGTGG 44470 ||||||||| | |||| ||| | || || || | || || |||||||| ||||||| | Sbjct 540 TCGGCATAGGCGCGGATCTCGTATTGCGCGTGCGCGTCCGCGCGCAGGCGGAGGAAGTTG 599 Query 44471 AAGAGGTTGTGTAGGTCAATCTTCCAATACCATTGGGTGTAGACATTGACCGGCAAGTTC 44530 || |||||||| ||||| ||||||| ||||| || |||||| |||| || || |||| Sbjct 600 AACAGGTTGTGCAGGTCCGTCTTCCAGTACCACTGCGTGTAGGTGTTGAGCGTCAGGTTC 659 Query 44531 ATGCGGGCCAGTTCGCGGGCCAAGCCGTCCTGAC---------------CGTCATCGCTG 44575 || ||||| || ||||| || | ||| |||||| || | ||| | Sbjct 660 ATCCGGGCGAGCTCGCGCGCGA-GCC--CCTGACGCTCCGGCTCGCCTCCGCCTTCGTTC 716 Query 44576 ATCATCTCTTCATA-GTGATCATAGGCGTTCTGG---GCGTCGTTCATCAGGTAGTGTAG 44631 | |||| || | || || | ||| || ||||| | |||| || || Sbjct 717 AACATC----CAGATGTAGTCGCGGTAGTTGCGGCCCGCGTCCTCGCGCAGGAGGTCGAG 772 Query 44632 GACCCGCTGAGCCTCAGCCCCCTGAAGAACATTATCATCGCGGCCCTGCCCGTTCACCTT 44691 || ||| |||||| | ||||| || ||| | ||||||||||| | ||| | Sbjct 773 CACGCGCACAGCCTCCTCGCCCTGGAGCACAC---CGTCGCGGCCCTGGCGGTTAGACGC 829 Query 44692 CGACTGGGATGCGAGATCTTGGGGACTTGGGATGTAGAACTCACCCGGCATG-ATCGAAT 44750 ||||| | || | | || |||||||||||||| | | | | | ||| | Sbjct 830 AGACTGCGCGGCCAATTGCGCCGGTTCCGGGATGTAGAACTC-CTGGTCGAGCACCGAGT 888 Query 44751 AGCGGGCTGAGTATTCATTCACGTTGGCCGTCCGGTGACGGATCCATTGGCGGGCCACAA 44810 ||||||| || ||||| || ||| ||| || ||||| |||||||| || |||||||| | Sbjct 889 AGCGGGCCGAATATTCGTTGACGCTGGAGGTGCGGTGGCGGATCCACTGCCGGGCCACGA 948 Query 44811 ACACGGGCAGTTTGACATGAAGTTTGATCTCACAACCCTCAAACGGGCTGGTGTGCCAAT 44870 | | ||||| || || || || |||||| || ||| || || ||| ||||| | Sbjct 949 AGATCGGCAGCTTCACGTGCAGCTTGATCGAGCACATCTCGAAGGGCGTGGAATGCCAGT 1008 Query 44871 GGCGCATAAGGTAGCGGATTAGGTCGCGGTCCTTGCTGACACCCTTGGTGCCCTGACCGT 44930 | ||||| ||||||||||| || | | ||||| |||||| ||||||||| | |||| Sbjct 1009 GCCGCATCAGGTAGCGGATCAGCCCCCTGTCCTCGCTGACCTGCTTGGTGCCGCG-CCGT 1067 Query 44931 AGGATACGCGGGCCATCTGGACGATAGCGCCGTCCGTGCCCATGTAGTCGATTGGTCGGA 44990 |||| || || || ||| || | || | || |||||||||||||| |||| Sbjct 1068 AGGACACCCGCGCGGCCTGCACCACGGCTGCATCGTCGCCCATGTAGTCGACGACGCGGA 1127 Query 44991 CAAAGCCATGATCTAGGACCGG 45012 ||||| ||||| || || || Sbjct 1128 TGAAGCCGTGATCGAGCACGGG 1149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181855052336560