Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq124414 125 1e-23
seq1750 123 4e-23
seq13269 109 1e-18
seq10846 109 1e-18
seq3441 109 1e-18
seq9422 95.1 2e-14
seq11477 86.0 1e-11
>seq124414
Length=715
Score = 125 bits (138), Expect = 1e-23
Identities = 170/237 (72%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | | ||||| |||| || | |||| |||||| |||||
Sbjct 278 AATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATT 337
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||||| | |||| | ||| || |||||||| || || ||||| | || || ||
Sbjct 338 GTAGTCGGCAAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATGAGCCTTTGCTG 397
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || |||||||| || || || ||||| | ||| | ||| ||||||||||||
Sbjct 398 ATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTCGCTTTCACATTGTCAATAGTATCGGA 457
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| || || || || || || || || || ||||| ||||| || |||||
Sbjct 458 GCTTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 514
>seq1750
Length=74028
Score = 123 bits (136), Expect = 4e-23
Identities = 169/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| || ||||| | | || || |||| |||||| || | |||||| || ||
Sbjct 62245 ATTTGCATTCCACCACGAAGGCGGAGGACCAAATGCAAGGTGGACTCTTTCTGTATGTTG 62186
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| | || |||| | ||| || | || ||||| ||||| || | ||||| |||
Sbjct 62185 TAGTCAGCCAATGTTCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGA 62126
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| ||||| || ||||| || ||||||||||| | ||| | ||| ||| || || ||
Sbjct 62125 TCTGGAGGAATACCTTCCTTGTCTTGTATTTTCGCTTTGACATTGTCAATTGTGTCAGAG 62066
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| | ||| || || || ||||| || ||||| |||||||| |||||
Sbjct 62065 CTTTCAACTTCCAAAGTGATTGTCTTTCCTGTAAGAGTTTTAACAAATATCTGCAT 62010
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||| ||||| |||| || | || | ||||| || || || ||
Sbjct 61783 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 61724
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | | ||| || || |||||||||||||| || | ||||| ||||| ||
Sbjct 61723 GCAAGAGTACGACCATCCTCCAACTGTTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGT 61664
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| |||||||| || || |||||||| | ||| | ||| || ||||| || |||
Sbjct 61663 GGGATTCCTTCCTTGTCCTGTATTTTTGCTTTGACATTATCGATTGTATCAGAGCTCTCG 61604
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || || || || ||||| ||||| || |||||
Sbjct 61603 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 61554
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192
|||||| | | || || || ||||||| || ||| || ||||| ||||| |
Sbjct 62921 ACCACCACGGAGGCGGAGAACAAGATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCTGC 62862
Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252
| || | | ||| || | || ||||| ||||| || | ||||| |||||||| ||
Sbjct 62861 AAGTGTGCGACCATCCTCCAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGG 62802
Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312
||||| || || || || || || | || | ||| ||| ||||| || ||| ||
Sbjct 62801 GATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGAGCTCTCCAC 62742
Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || || || || ||||||||||| || ||||| || |||||
Sbjct 62741 TTCGAGTGTGATTGTCTTGCCTGTTAGCGTCTTCACAAAAATCTGCAT 62694
>seq13269
Length=14915
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|||||||| || | || || || || || | ||||| || || ||| || || |||
Sbjct 13667 ATACCACCCCTGAGGCGGAGAACAAGGTGGAGTGTAGATTCCTTCTGAATGTTGTAATCG 13608
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| ||| || | || ||||| || ||||| | ||||| ||||| ||
Sbjct 13607 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGG 13548
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||||||||| || || ||||| | || | ||| || ||||| ||| ||||
Sbjct 13547 GGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTATCTATTGTATCAGAACTCTCA 13488
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||||| ||||| || || || || || || || || ||||| || |||||
Sbjct 13487 ACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACAAAAATCTGCAT 13438
Score = 105 bits (116), Expect = 1e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208
|| |||| ||| | |||| |||||| || |||||||| | || || || |||
Sbjct 14105 AGAACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAGCCAAAGTCCTGCCATCC 14046
Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268
|| | |||||||| || || || | |||||||| || || || || |||||||||||
Sbjct 14045 TCGAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCC 13986
Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328
|| ||||| | || | ||| ||| ||||| || ||| || || || || || ||
Sbjct 13985 TGAATTTTTGCCTTAACATTGTCAATTGTATCAGAGCTCTCGACCTCAAGGGTGATGGTC 13926
Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || |||||||| |||||||||
Sbjct 13925 TTGCCAGTAAGGGTCTTTACAAAGATTTGCATT 13893
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||||||||| ||||| |||| || | || | ||||| || || || ||
Sbjct 13439 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 13380
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || |||| | ||| || || ||||| || ||||| || | ||||| || || ||
Sbjct 13379 GCCAAAGTTCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGT 13320
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| ||||| || || || |||||||| | ||| | ||| || ||||| || |||
Sbjct 13319 GGGATTCCCTCCTTGTCCTGTATTTTTGCTTTGACATTATCTATTGTATCAGAGCTCTCG 13260
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || |||||||| || || || || || ||||| || || || |||||
Sbjct 13259 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACGAAGATCTGCAT 13210
>seq10846
Length=19378
Score = 109 bits (120), Expect = 1e-18
Identities = 167/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| || |||||||| | || || ||||| || | || | || || |||||
Sbjct 11494 AATTTGCATTCCACCTCTAAGCCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATT 11553
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|||||||| | || | | ||| || | || || |||||||| || || ||||| ||
Sbjct 11554 ATAGTCGGCAAGGGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG 11613
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
||| || || || || || || ||||| ||||||| ||| | || ||| || || ||
Sbjct 11614 ATCCGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTATCAATGGTGTCAGA 11673
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||||||| | ||| || ||||| || || | || || ||||| |||||||||
Sbjct 11674 GCTCTCAACTTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 11731
>seq3441
Length=50379
Score = 109 bits (120), Expect = 1e-18
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| |||| || | || | |||||| ||||| ||||||| | |||| | |
Sbjct 14843 CGAAGCACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCA 14902
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || |||||||| || || ||||| | || || ||||| || || ||||| || ||
Sbjct 14903 TCTTCCAATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCCTCCTTG 14962
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || ||||| | ||| | ||| |||||||||||| ||||| || || || ||
Sbjct 14963 TCCTGGATTTTCGCTTTCACATTGTCAATAGTATCGGAGCTTTCAACCTCAAGGGTGATG 15022
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || || || ||||| ||||| || |||||
Sbjct 15023 GTCTTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 15057
Score = 100 bits (110), Expect = 5e-16
Identities = 165/238 (69%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||| | | ||||| |||| || | |||| ||| || || ||
Sbjct 14593 AATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTAGACTCCTTTTGGATGTT 14652
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
|||||| | | || | | ||| || | || || ||||||||||| || ||||| ||
Sbjct 14653 ATAGTCTGCAAGGGTACGACCATCTTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTG 14712
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|| || || || || ||||| ||||||||||| | || | ||| ||| ||||| ||
Sbjct 14713 GTCTGGTGGGATACCCTCTTTGTCTTGTATTTTTGCCTTGACATTATCAATGGTATCCGA 14772
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || | || || ||||| || || || || || |||||||| ||||||
Sbjct 14773 GCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTCAGGGTCTTGACAAATATCTGCATT 14830
Score = 96.9 bits (106), Expect = 6e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| | || ||||| |||| || | ||| | || || |||||||| ||
Sbjct 14144 ATCCCACCACGCAGACGAAGCACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCA 14203
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | || | ||| || | || || || ||||| || | ||||| || || |||
Sbjct 14204 GCAAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGA 14263
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || ||||| |||||||| || | || | ||| ||||||||| ||| |||
Sbjct 14264 GGGATCCCCTCTTTGTCTTGTATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCA 14323
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| | ||||||||||| || || | || || ||||| |||||||||
Sbjct 14324 ACTTCCAATGTTATAGTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 14374
>seq9422
Length=22427
Score = 95.1 bits (104), Expect = 2e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205
||||| || || || | || | ||| || || || ||||||| || |||| |
Sbjct 11853 CGAAGCACAAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGGCCA 11912
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | ||||||||||| || || || | |||||| || || || || || || ||
Sbjct 11913 TCCTCGAGCTGTTTTCCGGCGAAGATCAAGCGCTGTTGGTCCGGTGGGATCCCCTCCTTG 11972
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
||||| || |||| || | ||| || || || || |||||||| || || |||||
Sbjct 11973 TCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAGGACTCAACCTCAAGGGTTATG 12032
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|| || || ||||| ||||| || || || |||||
Sbjct 12033 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12067
>seq11477
Length=17588
Score = 86.0 bits (94), Expect = 1e-11
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211
|||| ||||| || | || || ||| ||||| |||| | || | | || |||
Sbjct 305 ACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTCCTCT 364
Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271
|| ||||||||||| || || | ||||| || || || || || ||||| || || ||
Sbjct 365 AACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 424
Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331
|| |||| || | ||| || || ||||| ||| || || || || || |||||
Sbjct 425 ATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTTTTT 484
Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| ||||| ||||| || || || ||||| ||
Sbjct 485 CCGGTTAGGGTTTTCACGAAGATCTGCATCTT 516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 898152100854480
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