Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq124414 125 1e-23 seq1750 123 4e-23 seq13269 109 1e-18 seq10846 109 1e-18 seq3441 109 1e-18 seq9422 95.1 2e-14 seq11477 86.0 1e-11 >seq124414 Length=715 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| |||| || | |||| |||||| ||||| Sbjct 278 AATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGGATATT 337 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||||| | |||| | ||| || |||||||| || || ||||| | || || || Sbjct 338 GTAGTCGGCAAGAGTTCGACCATCTTCCAATTGTTTACCAGCGAAAATGAGCCTTTGCTG 397 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || || || ||||| | ||| | ||| |||||||||||| Sbjct 398 ATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTCGCTTTCACATTGTCAATAGTATCGGA 457 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || ||||| ||||| || ||||| Sbjct 458 GCTTTCAACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 514 >seq1750 Length=74028 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || |||| |||||| || | |||||| || || Sbjct 62245 ATTTGCATTCCACCACGAAGGCGGAGGACCAAATGCAAGGTGGACTCTTTCTGTATGTTG 62186 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | || |||| | ||| || | || ||||| ||||| || | ||||| ||| Sbjct 62185 TAGTCAGCCAATGTTCGACCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGA 62126 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||||||||| | ||| | ||| ||| || || || Sbjct 62125 TCTGGAGGAATACCTTCCTTGTCTTGTATTTTCGCTTTGACATTGTCAATTGTGTCAGAG 62066 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | ||| || || || ||||| || ||||| |||||||| ||||| Sbjct 62065 CTTTCAACTTCCAAAGTGATTGTCTTTCCTGTAAGAGTTTTAACAAATATCTGCAT 62010 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| |||| || | || | ||||| || || || || Sbjct 61783 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 61724 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || || |||||||||||||| || | ||||| ||||| || Sbjct 61723 GCAAGAGTACGACCATCCTCCAACTGTTTTCCGGCAAAGATCAGCCTCTGCTGATCTGGT 61664 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || |||||||| | ||| | ||| || ||||| || ||| Sbjct 61663 GGGATTCCTTCCTTGTCCTGTATTTTTGCTTTGACATTATCGATTGTATCAGAGCTCTCG 61604 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 61603 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTGACAAAGATCTGCAT 61554 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||||| || ||| || ||||| ||||| | Sbjct 62921 ACCACCACGGAGGCGGAGAACAAGATGCAGAGTGCTCTCCTTCTGGATATTGTAGTCTGC 62862 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || ||||| ||||| || | ||||| |||||||| || Sbjct 62861 AAGTGTGCGACCATCCTCCAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGATCAGGTGG 62802 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || || || || || || | || | ||| ||| ||||| || ||| || Sbjct 62801 GATTCCCTCCTTGTCCTGAATCTTTGCCTTCACATTGTCAATGGTATCAGAGCTCTCCAC 62742 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || ||||||||||| || ||||| || ||||| Sbjct 62741 TTCGAGTGTGATTGTCTTGCCTGTTAGCGTCTTCACAAAAATCTGCAT 62694 >seq13269 Length=14915 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || || || || | ||||| || || ||| || || ||| Sbjct 13667 ATACCACCCCTGAGGCGGAGAACAAGGTGGAGTGTAGATTCCTTCTGAATGTTGTAATCG 13608 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || ||||| || ||||| | ||||| ||||| || Sbjct 13607 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGG 13548 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | ||| || ||||| ||| |||| Sbjct 13547 GGAATTCCTTCTTTGTCCTGAATTTTAGCCTTCACATTATCTATTGTATCAGAACTCTCA 13488 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || || || || || || ||||| || ||||| Sbjct 13487 ACTTCAAGAGTAATGGTCTTTCCGGTGAGTGTCTTGACAAAAATCTGCAT 13438 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| |||||| || |||||||| | || || || ||| Sbjct 14105 AGAACCAAATGAAGAGTAGACTCTTTCTGGATGTTATAGTCAGCCAAAGTCCTGCCATCC 14046 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | |||||||| || || || | |||||||| || || || || ||||||||||| Sbjct 14045 TCGAGCTGTTTTCCAGCGAATATCAGCCTCTGTTGGTCTGGTGGAATACCTTCTTTATCC 13986 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||| | || | ||| ||| ||||| || ||| || || || || || || Sbjct 13985 TGAATTTTTGCCTTAACATTGTCAATTGTATCAGAGCTCTCGACCTCAAGGGTGATGGTC 13926 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || |||||||| ||||||||| Sbjct 13925 TTGCCAGTAAGGGTCTTTACAAAGATTTGCATT 13893 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| |||| || | || | ||||| || || || || Sbjct 13439 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 13380 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| | ||| || || ||||| || ||||| || | ||||| || || || Sbjct 13379 GCCAAAGTTCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGT 13320 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || |||||||| | ||| | ||| || ||||| || ||| Sbjct 13319 GGGATTCCCTCCTTGTCCTGTATTTTTGCTTTGACATTATCTATTGTATCAGAGCTCTCG 13260 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| || || || ||||| Sbjct 13259 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACGAAGATCTGCAT 13210 >seq10846 Length=19378 Score = 109 bits (120), Expect = 1e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||| | || || ||||| || | || | || || ||||| Sbjct 11494 AATTTGCATTCCACCTCTAAGCCGGAGCACCAGGTGGAGGGTGGATTCCTTTTGGATATT 11553 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| | || | | ||| || | || || |||||||| || || ||||| || Sbjct 11554 ATAGTCGGCAAGGGTGCGACCATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTG 11613 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || || || || ||||| ||||||| ||| | || ||| || || || Sbjct 11614 ATCCGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTATCAATGGTGTCAGA 11673 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| | ||| || ||||| || || | || || ||||| ||||||||| Sbjct 11674 GCTCTCAACTTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 11731 >seq3441 Length=50379 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | |||||| ||||| ||||||| | |||| | | Sbjct 14843 CGAAGCACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCGGCAAGAGTTCGACCA 14902 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| || || ||||| | || || ||||| || || ||||| || || Sbjct 14903 TCTTCCAATTGTTTACCAGCGAAAATGAGCCTTTGCTGATCTGGTGGGATTCCCTCCTTG 14962 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| | ||| | ||| |||||||||||| ||||| || || || || Sbjct 14963 TCCTGGATTTTCGCTTTCACATTGTCAATAGTATCGGAGCTTTCAACCTCAAGGGTGATG 15022 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| ||||| || ||||| Sbjct 15023 GTCTTTCCAGTGAGAGTTTTCACAAAGATCTGCAT 15057 Score = 100 bits (110), Expect = 5e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | ||||| |||| || | |||| ||| || || || Sbjct 14593 AATTTGCATACCACCACGGAGACGAAGCACCAAGTGGAGGGTAGACTCCTTTTGGATGTT 14652 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | || | | ||| || | || || ||||||||||| || ||||| || Sbjct 14653 ATAGTCTGCAAGGGTACGACCATCTTCAAGCTGCTTGCCGGCAAAAATCAACCTCTGCTG 14712 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || ||||| ||||||||||| | || | ||| ||| ||||| || Sbjct 14713 GTCTGGTGGGATACCCTCTTTGTCTTGTATTTTTGCCTTGACATTATCAATGGTATCCGA 14772 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || | || || ||||| || || || || || |||||||| |||||| Sbjct 14773 GCTTTCCACCTCCAAGGTGATGGTTTTTCCAGTCAGGGTCTTGACAAATATCTGCATT 14830 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||| || | ||| | || || |||||||| || Sbjct 14144 ATCCCACCACGCAGACGAAGCACCAAGTGAAGTGTCGATTCCTTTTGGATATTATAATCA 14203 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || || ||||| || | ||||| || || ||| Sbjct 14204 GCAAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCCGGA 14263 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| |||||||| || | || | ||| ||||||||| ||| ||| Sbjct 14264 GGGATCCCCTCTTTGTCTTGTATCTTTGCCTTGACATTATCAATAGTATCAGAACTTTCA 14323 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | ||||||||||| || || | || || ||||| ||||||||| Sbjct 14324 ACTTCCAATGTTATAGTTTTTCCAGTCAAGGTCTTCACAAAAATTTGCATT 14374 >seq9422 Length=22427 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || || || | || | ||| || || || ||||||| || |||| | Sbjct 11853 CGAAGCACAAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTTCGGCCA 11912 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||| || || || | |||||| || || || || || || || Sbjct 11913 TCCTCGAGCTGTTTTCCGGCGAAGATCAAGCGCTGTTGGTCCGGTGGGATCCCCTCCTTG 11972 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| || || || || |||||||| || || ||||| Sbjct 11973 TCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCTGAGGACTCAACCTCAAGGGTTATG 12032 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| ||||| || || || ||||| Sbjct 12033 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 12067 >seq11477 Length=17588 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||| || | || || ||| ||||| |||| | || | | || ||| Sbjct 305 ACCAAATGCAGAGTCGATTCCTTCTGAATGTTATAATCGGCGAGGGTGCGACCGTCCTCT 364 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || ||||||||||| || || | ||||| || || || || || ||||| || || || Sbjct 365 AACTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 424 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| || | ||| || || ||||| ||| || || || || || ||||| Sbjct 425 ATCTTGGCCTTGACATTGTCTATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTTTTT 484 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| ||||| || || || ||||| || Sbjct 485 CCGGTTAGGGTTTTCACGAAGATCTGCATCTT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898152100854480