Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq119262 453 6e-123 seq37323 210 1e-49 seq117163 141 5e-29 seq78025 111 8e-20 >seq119262 Length=507 Score = 453 bits (502), Expect = 6e-123 Identities = 407/509 (80%), Gaps = 4/509 (1%) Strand=Plus/Plus Query 59698 GTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTAC 59757 || ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCGCCTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTAC 60 Query 59758 TGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTCATCATTCGTGAC 59817 ||||| || | ||||| ||||||||||||||| | ||||| |||||||| || ||| Sbjct 61 TGGTCCTCGCGCGCCAAGCTCACGAACACGGCCGACCTCATCCGCCTCATCATCCGCGAC 120 Query 59818 GAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTGGAGACTCAGAAC 59877 ||||| |||||||| ||||||||||| |||||||||||| || || ||| | | Sbjct 121 GAGGCCGTGCACGGGTACTACATCGGCTACAAGTTCCAGAAGGGGCTCGAGGGCCTGTCG 180 Query 59878 GAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTACTCGAGTTGTACGAC 59937 |||| ||| ||||| | ||||||||||||| | ||||| |||| | |||||| Sbjct 181 GAGGAGCGCAAGCAGGAGATCAAGGACTACACGTTCTCGCTGCTGTACGAGCTCTACGAC 240 Query 59938 AACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGACTGAGGATGTCAAG 59997 |||||||| ||||||| ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 241 AACGAGATCCAGTACACCCAGGACCTCTACGACGGCGTCGGTCTGACCGAGGACGTCAAG 300 Query 59998 ATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCTACGAGGCGCTGTTC 60057 | |||||||| ||||||||||||||||||||| ||||| || ||||||||| || ||||| Sbjct 301 AAGTTCCTGCACTACAACGCCAACAAGGCGCTCATGAACCTGGGCTACGAGCCGATGTTC 360 Query 60058 CCG--CGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGTCCCCTGGCGGGG 60115 ||| | |||| || || ||||| |||||||| || ||||||||||||| || | Sbjct 361 CCGAAGGAGACG--ACGGACGTGAACCCGGCGATCCTGTCGGCACTGTCCCCGAACGCCG 418 Query 60116 ACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTGGCAAGGCTGAGG 60175 |||||||||||||||||||||| || ||| |||| || || |||||||| ||| Sbjct 419 ACGAGAACCACGACTTCTTCTCCGGGAGCGGCTCGTCGTACGTCATCGGCAAGGCGGAGA 478 Query 60176 TTACGGAAGACGAGGATTGGGACTTCTAG 60204 || || |||||||| |||||||||||| Sbjct 479 CCACCGAGGACGAGGACTGGGACTTCTAG 507 >seq37323 Length=3330 Score = 210 bits (232), Expect = 1e-49 Identities = 537/813 (66%), Gaps = 71/813 (9%) Strand=Plus/Minus Query 62046 GTGGATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGA 62105 |||| | |||||||||| || |||||| |||||||||||||||||||| | | ||||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 62106 CG---CCGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAA 62162 || |||| | |||||||||||||||||||| || || || || |||||| Sbjct 1841 CGAGACCGATG---CGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCG 1785 Query 62163 GATCGCGCAGCGCCACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGC 62222 |||||| |||| |||||||||| || | || || ||| |||||||| Sbjct 1784 GATCGCCCAGCAGCACATCAAGGTCGC---GCAG------GCCGAGATGACGCGGCTG-- 1736 Query 62223 TGGCTCCGATTCGGTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGA 62282 ||| ||| | ||||| |||| || || || | ||||| Sbjct 1735 TGGATCCAGCT--------GCCCG--------------ACCGCGACCTGGCCTACCTGGT 1698 Query 62283 CGAGGGAACGTGGATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGC 62342 ||||| ||| | ||||||| |||||| || ||| ||||| ||||| ||||| Sbjct 1697 GGAGGGCACGCCGCAGTTCGACCGCTACATCGCCGAACTGCGATGGGCGCAGCGCTTCGC 1638 Query 62343 GTACCTGAACCGTGCGGAGATGATGGACCGCTTCGT---CCAGGTGTTCGCGTGGTGGAT 62399 |||||||| | |||||||||||||||| |||| |||||| | || | | Sbjct 1637 CCTGCTGAACCGCGAGGAGATGATGGACCGCGTCGTGCGCCAGGTCTCCG---AGCACCT 1581 Query 62400 GGGCGTCGAGGCTCAGCGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGT 62459 || | | || ||| ||| ||||| ||||||||||||||||||| |||| Sbjct 1580 CGGTGCGGCGGTGCAG------GAGCGCGAGCGGATCAACTGCCACCACAACTTCACG-- 1529 Query 62460 CCCCACCGTGATCGAC----GGGGAGCGA-GTGTGGTTGACCCGCAAGGGGGCAATCGAC 62514 || | || || | || | || || ||| || |||||||||| || ||| | Sbjct 1528 ---CAGCAGGAGCGGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAG 1472 Query 62515 GCGACCGAGGGCAAGCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTG 62574 ||| ||||| | || ||| ||||||| || |||||||| ||| || ||||||||| Sbjct 1471 GCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTG 1412 Query 62575 CGGGGGAAGGGCTGCAGCGCTTCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTC 62634 |||| ||| | | | | | || |||| || || ||||| ||| | | Sbjct 1411 GAGGGGCGCGGCGACCGGATGGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTG 1352 Query 62635 TCCCGCACGAAGGCCAAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAGATGCAGGGC 62694 || || ||||||| | | |||||| | || | ||| |||| |||| |||| Sbjct 1351 TCGCGGTCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGC 1292 Query 62695 ATCGAGTGGCGCGAGGACATCGCCGAGAAGCTGGTCGATGAGATCCCGTCCTGCTACAAG 62754 ||||||| || ||||| ||||| | | || ||||||||| ||||||| Sbjct 1291 ATCGAGTTCCG---GGACA---CCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAG 1238 Query 62755 GACATCGACCAGGTCATGGCCGATGCCGAACCG--CTGGTGGACGTGGTGACAACCCTGC 62812 ||||||||||| |||||||| || | ||| ||||| |||| | ||||||| Sbjct 1237 CCGATCGACCAGGTGATGGCCGACGCGG--CCGACCTGGTCACCGTGCGGCACACCCTGC 1180 Query 62813 GCCAGGTTCTCAACGTCAAGGGCACCTAGCCCG 62845 ||||| | ||||||| |||||| ||||| || Sbjct 1179 GCCAGCTGGTCAACGTGAAGGGCGACTAGCGCG 1147 Score = 120 bits (132), Expect = 2e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 61693 ATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCT 61752 ||||| |||||| ||||||||||||| |||||||| || || ||| ||| || | Sbjct 2617 ATGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCC 2558 Query 61753 GCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGAC 61812 |||||||| | || ||||| || ||||| || || |||||||| || ||||||||| Sbjct 2557 ACGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGAC 2498 Query 61813 ATCGGCTGCGGCATGATTGCCGTCAAGACGCGGTTC 61848 ||||||||||| ||||| || ||| |||| |||| Sbjct 2497 ATCGGCTGCGGGATGATCGCGGTCCGCACGCAGTTC 2462 >seq117163 Length=525 Score = 141 bits (156), Expect = 5e-29 Identities = 357/532 (67%), Gaps = 53/532 (10%) Strand=Plus/Plus Query 62056 CAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGACGCCGAGGAC 62115 |||||||| | || || |||||||||||||||||| | | || |||| |||||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 62116 AACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGCGCAGCGC 62175 |||||| |||||| ||||| || ||||| ||||||||| |||||||||| Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 62176 CACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGCTGGCTCCGATTCG 62235 |||||| ||| || | || || | || | || | ||| ||| || ||| Sbjct 154 CACATCGAGGTCGC---GCAG----GCCCTGATGA--CGAAG-TGG-TGGATC-GAT--- 198 Query 62236 GTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGACGAGGGAACGTGG 62295 ||||| ||||| || ||||| | ||||| ||||| ||| | Sbjct 199 ------------------CTCCCGCACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCG 240 Query 62296 ATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGTACCTGAACCGT 62355 ||||||| ||||||| |||||| |||||| |||||||||||| | ||||| Sbjct 241 GAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGC 300 Query 62356 GCGGAGATGATGGACCGCTTCGTCCAGGTGTTCGCGTGGTGGATGGGCGTCGAGGCTCAG 62415 | |||||||||||||||| |||||| | | || | | | | || |||||| | Sbjct 301 GAGGAGATGATGGACCGCGTCGTCCGGCAGCTCTC--CGAGCA-CCTCGGCGAGGC-CGT 356 Query 62416 CGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGTCCCCACCGTGATCGAC 62475 |||| ||| |||||| |||||| |||||||||| |||| || | || || | Sbjct 357 CGTG--GAGCAGGAGCGGATCAACACGCACCACAACTTCACG-----CAGCAGGAGCGGC 409 Query 62476 ----GGGGAGCGA--GTGTGGTTGACCCGCAAGGGGGCAATCGACGCGACCGAGGGC-AA 62528 || || || || ||| | | || ||||| || ||| ||| ||||||| | Sbjct 410 ACTTCGGCAG-GACCGTCTGGGTCTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAG 468 Query 62529 GCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGGGG 62580 || |||| ||||||| || |||||||||||| || ||||||||| |||| Sbjct 469 GCCGGGC-TGATCCCCGGATCGATGGGCACCGCCTCCTACGTGGTGGAGGGG 519 >seq78025 Length=530 Score = 111 bits (122), Expect = 8e-20 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62055 GCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGACGCCGAGGA 62114 ||||||||| || ||||| ||||||||||||||||||| | | |||||| || Sbjct 265 GCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGA 324 Query 62115 CAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGCGCAGCG 62174 | |||||||||||||||||||| || || ||||| || ||||||||| ||||| || Sbjct 325 CCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCG 384 Query 62175 CCACATCAAGG 62185 |||||||||| Sbjct 385 GCACATCAAGG 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258509629986564