Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_021299.1
Length=80955
Score E
Sequences producing significant alignments: (Bits) Value
seq119262 453 6e-123
seq37323 210 1e-49
seq117163 141 5e-29
seq78025 111 8e-20
>seq119262
Length=507
Score = 453 bits (502), Expect = 6e-123
Identities = 407/509 (80%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 59698 GTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTAC 59757
|| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCGCCTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCGGGCTTCTACCTGCCGATGTAC 60
Query 59758 TGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCGGCTCATCATTCGTGAC 59817
||||| || | ||||| ||||||||||||||| | ||||| |||||||| || |||
Sbjct 61 TGGTCCTCGCGCGCCAAGCTCACGAACACGGCCGACCTCATCCGCCTCATCATCCGCGAC 120
Query 59818 GAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGGCCTGGAGACTCAGAAC 59877
||||| |||||||| ||||||||||| |||||||||||| || || ||| | |
Sbjct 121 GAGGCCGTGCACGGGTACTACATCGGCTACAAGTTCCAGAAGGGGCTCGAGGGCCTGTCG 180
Query 59878 GAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCTACTCGAGTTGTACGAC 59937
|||| ||| ||||| | ||||||||||||| | ||||| |||| | ||||||
Sbjct 181 GAGGAGCGCAAGCAGGAGATCAAGGACTACACGTTCTCGCTGCTGTACGAGCTCTACGAC 240
Query 59938 AACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACTGACTGAGGATGTCAAG 59997
|||||||| ||||||| ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 241 AACGAGATCCAGTACACCCAGGACCTCTACGACGGCGTCGGTCTGACCGAGGACGTCAAG 300
Query 59998 ATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGGCTACGAGGCGCTGTTC 60057
| |||||||| ||||||||||||||||||||| ||||| || ||||||||| || |||||
Sbjct 301 AAGTTCCTGCACTACAACGCCAACAAGGCGCTCATGAACCTGGGCTACGAGCCGATGTTC 360
Query 60058 CCG--CGCGACGAAACCGAGGTGAATGCGGCGATCTTGGCGGCACTGTCCCCTGGCGGGG 60115
||| | |||| || || ||||| |||||||| || ||||||||||||| || |
Sbjct 361 CCGAAGGAGACG--ACGGACGTGAACCCGGCGATCCTGTCGGCACTGTCCCCGAACGCCG 418
Query 60116 ACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGTGATTGGCAAGGCTGAGG 60175
|||||||||||||||||||||| || ||| |||| || || |||||||| |||
Sbjct 419 ACGAGAACCACGACTTCTTCTCCGGGAGCGGCTCGTCGTACGTCATCGGCAAGGCGGAGA 478
Query 60176 TTACGGAAGACGAGGATTGGGACTTCTAG 60204
|| || |||||||| ||||||||||||
Sbjct 479 CCACCGAGGACGAGGACTGGGACTTCTAG 507
>seq37323
Length=3330
Score = 210 bits (232), Expect = 1e-49
Identities = 537/813 (66%), Gaps = 71/813 (9%)
Strand=Plus/Minus
Query 62046 GTGGATGGAGCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGA 62105
|||| | |||||||||| || |||||| |||||||||||||||||||| | | |||||
Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842
Query 62106 CG---CCGAGGACAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAA 62162
|| |||| | |||||||||||||||||||| || || || || ||||||
Sbjct 1841 CGAGACCGATG---CGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCG 1785
Query 62163 GATCGCGCAGCGCCACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGC 62222
|||||| |||| |||||||||| || | || || ||| ||||||||
Sbjct 1784 GATCGCCCAGCAGCACATCAAGGTCGC---GCAG------GCCGAGATGACGCGGCTG-- 1736
Query 62223 TGGCTCCGATTCGGTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGA 62282
||| ||| | ||||| |||| || || || | |||||
Sbjct 1735 TGGATCCAGCT--------GCCCG--------------ACCGCGACCTGGCCTACCTGGT 1698
Query 62283 CGAGGGAACGTGGATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGC 62342
||||| ||| | ||||||| |||||| || ||| ||||| ||||| |||||
Sbjct 1697 GGAGGGCACGCCGCAGTTCGACCGCTACATCGCCGAACTGCGATGGGCGCAGCGCTTCGC 1638
Query 62343 GTACCTGAACCGTGCGGAGATGATGGACCGCTTCGT---CCAGGTGTTCGCGTGGTGGAT 62399
|||||||| | |||||||||||||||| |||| |||||| | || | |
Sbjct 1637 CCTGCTGAACCGCGAGGAGATGATGGACCGCGTCGTGCGCCAGGTCTCCG---AGCACCT 1581
Query 62400 GGGCGTCGAGGCTCAGCGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGT 62459
|| | | || ||| ||| ||||| ||||||||||||||||||| ||||
Sbjct 1580 CGGTGCGGCGGTGCAG------GAGCGCGAGCGGATCAACTGCCACCACAACTTCACG-- 1529
Query 62460 CCCCACCGTGATCGAC----GGGGAGCGA-GTGTGGTTGACCCGCAAGGGGGCAATCGAC 62514
|| | || || | || | || || ||| || |||||||||| || ||| |
Sbjct 1528 ---CAGCAGGAGCGGCACTTCGGCCGTGACGTCTGGCTGTCCCGCAAGGGCGCCATCCAG 1472
Query 62515 GCGACCGAGGGCAAGCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTG 62574
||| ||||| | || ||| ||||||| || |||||||| ||| || |||||||||
Sbjct 1471 GCGCGTCAGGGCGACCTCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTG 1412
Query 62575 CGGGGGAAGGGCTGCAGCGCTTCTTTGCATTCTGCGCCCCATGGAGCCGGTCGCCGGTTC 62634
|||| ||| | | | | | || |||| || || ||||| ||| | |
Sbjct 1411 GAGGGGCGCGGCGACCGGATGGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTG 1352
Query 62635 TCCCGCACGAAGGCCAAGGAACTGTTCACCAGGGATGACCTGGCCGAGCAGATGCAGGGC 62694
|| || ||||||| | | |||||| | || | ||| |||| |||| ||||
Sbjct 1351 TCGCGGTCGAAGGCGCGGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGC 1292
Query 62695 ATCGAGTGGCGCGAGGACATCGCCGAGAAGCTGGTCGATGAGATCCCGTCCTGCTACAAG 62754
||||||| || ||||| ||||| | | || ||||||||| |||||||
Sbjct 1291 ATCGAGTTCCG---GGACA---CCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAG 1238
Query 62755 GACATCGACCAGGTCATGGCCGATGCCGAACCG--CTGGTGGACGTGGTGACAACCCTGC 62812
||||||||||| |||||||| || | ||| ||||| |||| | |||||||
Sbjct 1237 CCGATCGACCAGGTGATGGCCGACGCGG--CCGACCTGGTCACCGTGCGGCACACCCTGC 1180
Query 62813 GCCAGGTTCTCAACGTCAAGGGCACCTAGCCCG 62845
||||| | ||||||| |||||| ||||| ||
Sbjct 1179 GCCAGCTGGTCAACGTGAAGGGCGACTAGCGCG 1147
Score = 120 bits (132), Expect = 2e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 61693 ATGCCGTTCATCTACCCGCACCTGGCGCTGATGCCGGATGCCCACTCGGGCAAGGGATCT 61752
||||| |||||| ||||||||||||| |||||||| || || ||| ||| || |
Sbjct 2617 ATGCCCTTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCC 2558
Query 61753 GCGGTCGGCACCGTCATCCCCACCAAGGGCGCTGTCATTCCGGCCGCTGTTGGGGTGGAC 61812
|||||||| | || ||||| || ||||| || || |||||||| || |||||||||
Sbjct 2557 ACGGTCGGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGAC 2498
Query 61813 ATCGGCTGCGGCATGATTGCCGTCAAGACGCGGTTC 61848
||||||||||| ||||| || ||| |||| ||||
Sbjct 2497 ATCGGCTGCGGGATGATCGCGGTCCGCACGCAGTTC 2462
>seq117163
Length=525
Score = 141 bits (156), Expect = 5e-29
Identities = 357/532 (67%), Gaps = 53/532 (10%)
Strand=Plus/Plus
Query 62056 CAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGACGCCGAGGAC 62115
|||||||| | || || |||||||||||||||||| | | || |||| ||||||
Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93
Query 62116 AACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGCGCAGCGC 62175
|||||| |||||| ||||| || ||||| ||||||||| ||||||||||
Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153
Query 62176 CACATCAAGGCGGCTGTGGAGTACTGCGCAGAGGGTGCGCGGCTGGCTGGCTCCGATTCG 62235
|||||| ||| || | || || | || | || | ||| ||| || |||
Sbjct 154 CACATCGAGGTCGC---GCAG----GCCCTGATGA--CGAAG-TGG-TGGATC-GAT--- 198
Query 62236 GTTCGCGCCCGCTACCGACTCCCTCACCGAGATCTCGCGTTCCTGGACGAGGGAACGTGG 62295
||||| ||||| || ||||| | ||||| ||||| ||| |
Sbjct 199 ------------------CTCCCGCACCGCGACCTCGCCTACCTGGTGGAGGGGACGGCG 240
Query 62296 ATGTTCGACACGTACATCAAGGAGCTGGAGTGGGCCCAGCGGTTCGCGTACCTGAACCGT 62355
||||||| ||||||| |||||| |||||| |||||||||||| | |||||
Sbjct 241 GAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAGCGGTTCGCGCTGGTCAACCGC 300
Query 62356 GCGGAGATGATGGACCGCTTCGTCCAGGTGTTCGCGTGGTGGATGGGCGTCGAGGCTCAG 62415
| |||||||||||||||| |||||| | | || | | | | || |||||| |
Sbjct 301 GAGGAGATGATGGACCGCGTCGTCCGGCAGCTCTC--CGAGCA-CCTCGGCGAGGC-CGT 356
Query 62416 CGTGTCGAGGTGGAGCGCATCAACTGCCACCACAACTACACGGTCCCCACCGTGATCGAC 62475
|||| ||| |||||| |||||| |||||||||| |||| || | || || |
Sbjct 357 CGTG--GAGCAGGAGCGGATCAACACGCACCACAACTTCACG-----CAGCAGGAGCGGC 409
Query 62476 ----GGGGAGCGA--GTGTGGTTGACCCGCAAGGGGGCAATCGACGCGACCGAGGGC-AA 62528
|| || || || ||| | | || ||||| || ||| ||| ||||||| |
Sbjct 410 ACTTCGGCAG-GACCGTCTGGGTCTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAG 468
Query 62529 GCTGGGCGTGATCCCGGGCTCGATGGGCACCCGGTCGTACGTGGTGCGGGGG 62580
|| |||| ||||||| || |||||||||||| || ||||||||| ||||
Sbjct 469 GCCGGGC-TGATCCCCGGATCGATGGGCACCGCCTCCTACGTGGTGGAGGGG 519
>seq78025
Length=530
Score = 111 bits (122), Expect = 8e-20
Identities = 103/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 62055 GCAGCTGGGATCTCTCGGCGGCGGCAACCACTTCATCGAGTTGTGTGTCGACGCCGAGGA 62114
||||||||| || ||||| ||||||||||||||||||| | | |||||| ||
Sbjct 265 GCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGA 324
Query 62115 CAACGTGTGGCTGTTCCTGCACTCCGGTTCTCGCGGAGTCGGCAACAAGATCGCGCAGCG 62174
| |||||||||||||||||||| || || ||||| || ||||||||| ||||| ||
Sbjct 325 CCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCG 384
Query 62175 CCACATCAAGG 62185
||||||||||
Sbjct 385 GCACATCAAGG 395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 258509629986564
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