Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq38053 141 3e-28 seq57685 127 6e-24 seq4509 118 3e-21 seq588 107 6e-18 seq10152 105 2e-17 seq10933 96.9 1e-14 seq81509 91.5 4e-13 seq33353 87.8 5e-12 >seq38053 Length=2306 Score = 141 bits (156), Expect = 3e-28 Identities = 200/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | ||| ||||||||||| || ||| | || || || || |||||||| ||| Sbjct 212 TTGACCAGACGTCGCTGAATATATCCCGTTTCGGCGGTCTTGACGGCGGTATCAATAAGA 271 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || | ||||| |||| ||||||||||| | ||| |||| || || | || | || Sbjct 272 CCTTCTCGACCCGCCATTGCATGGAAGAAGAATTCTGCCGGAGTAAGACCACGAAGATAG 331 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGG 302763 ||| |||| ||||||||||| | |||||| || | |||| |||||| || ||||| || Sbjct 332 GAGTTCTCGACGAAACCACGAGACTCGGGAGAGTAGTCGTCCTTGGTGAAATGTGGTAGA 391 Query 302764 GTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCAC 302823 | | | | ||||| |||| |||||||| || || ||| |||||| |||| | Sbjct 392 CTTCGATATTTGAAGCCGAATGGAATACGCTTGCCCTCTACGGACTGCTGACCCACGACT 451 Query 302824 GAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 | |||| ||||| ||||| | | || ||||| ||||| Sbjct 452 GCTGTCATTTGCGAGATATTGATAGCAGACCCCTTTGAGCC 492 >seq57685 Length=1792 Score = 127 bits (140), Expect = 6e-24 Identities = 213/305 (70%), Gaps = 5/305 (2%) Strand=Plus/Plus Query 155859 AGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT-ACACGCTC 155917 || |||||||||| | ||||| | ||||| |||| | ||| | | | ||||||| Sbjct 1213 AGACCAGGGCACTCGTTCGGGCACATCAGCGTCCAATCTCCATT-CTGCTCGACACGCTT 1271 Query 155918 CATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATC 155977 ||| || | ||| ||| | |||||||| ||||| | || |||||| | Sbjct 1272 CATGAAAAGATCGGGAATCCAGAGTGCATAGAAGAGGTCACGAGCACGGACCTCCTCCTT 1331 Query 155978 GCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATA 156037 |||||| ||||| || || || | ||| | | ||||| || |||||| || || Sbjct 1332 GCCGTGGTTCTTGCGAAGATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTA 1391 Query 156038 CATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATT 156094 ||| ||||| || | | | |||||||| || || ||||| |||||||| || || Sbjct 1392 CATGGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGACATAACGAGCAGTATTGTT 1451 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 |||||||| ||||| || | | ||||||||| ||||||||||| |||| ||| | ||| Sbjct 1452 GAAGACACGAAGCATTGGTACCAGACCATTGGATGTGCCATTGGTGCCGCCAATGTACGA 1511 Query 156155 ACCAG 156159 ||||| Sbjct 1512 ACCAG 1516 >seq4509 Length=41998 Score = 118 bits (130), Expect = 3e-21 Identities = 281/422 (67%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 ||||| |||||||| || | | || || |||||||||||||| ||||||||| Sbjct 2234 TTAAAACCATCCATTTCAGTAAGCAGCTGGTTGAGTGTTTGTTCCCTCTCATCATTT--- 2178 Query 288997 CCTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATG 289053 |||| |||| | | | |||| | | | ||||||||||| || || ||||| Sbjct 2177 CCTC------CACCAATACCTGTTCCTCTCTGCCTCCCAACAGCATCTATCTCATCAATA 2124 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || ||| || ||||| | || | ||||| || || || | || || Sbjct 2123 AAAACCAAACATGGGGAATTAGCCTTTGCTTTGTTGAATAAGTCCCTCACTCTTGAAGCA 2064 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | ||||||| |||| || | || ||||| | |||| || ||| | || | Sbjct 2063 CCCACACCAACAAACATCTCAATGAACTCAGACCCAGATAGAGAAAAGAAAGGAACCCCT 2004 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 ||||| || || | |||| | |||| | |||||| || || |||||||| || | | Sbjct 2003 GCTTCTCCAGCAATTGCCTTGGCCAACAATGTCTTTCCAGTCCCAGGTGGACCAACAAGA 1944 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 |||||||| || || | ||| || ||| | | || | || || ||| || || || Sbjct 1943 AGAACTCCTTTAGGAATTTTAGCTCCAACTGCAGTAAACTTTTCTGGGGCTTTCAAGAAC 1884 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTA 289353 | ||||| || | || || | ||||| |||||| || || |||||| |||| ||| Sbjct 1883 CCAACAATCTCTTGAAAATCTTGCTTTGCTTCATCAATACCAGCAACATCATCAAACGTA 1824 Query 289354 AT 289355 || Sbjct 1823 AT 1822 >seq588 Length=109198 Score = 107 bits (118), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||||||| ||||| ||||| || ||||| | |||||| || | || Sbjct 13279 TACCTTTCCTCTTGCCACCCCCTTGATCAACATATCGTGCAGTATCATTGAATACCCGTA 13220 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||| ||||| || || ||||| ||||| ||||||| || | | | Sbjct 13219 GCATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCAC 13160 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| |||| | ||||| || || | |||| ||| ||| || || | Sbjct 13159 GAATATTGTGAACTGAGACACCAATTCCTCCAGCAGATTTGCTAATGATAGCACACTCTT 13100 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| ||| | | || ||||||||| |||||||| ||| Sbjct 13099 TTAAAGTCTCATATATGCCTTCAATACTATCATCTTTCAT 13060 >seq10152 Length=20374 Score = 105 bits (116), Expect = 2e-17 Identities = 255/381 (67%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 ||||| || || ||| | |||||||| |||||| ||| | ||| | | |||| Sbjct 7493 TGATTTAGAGTACTTTCACGCTCATCATTGGAACCTGA-GAAGCCCCC--ACGCCCCCTT 7437 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| |||||||| || |||||||||| | || |||| | || || || Sbjct 7436 GCTCGACCAATTGCATCAATCTCATCAATGAAAACTATACTGGGAGCACACTGCCTTGCT 7377 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || | ||| || | ||| | ||||| ||||||| |||| || | || || Sbjct 7376 TCTTGAAACAAGTTTCTCACCCTGGACGGTCCAACACCAACAAACATCTCCATGAAATCT 7317 Query 289144 GAAGCGGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||| | || | | || ||| | ||| | ||| ||||| || | || ||||| Sbjct 7316 GAACCAGAAA-TGGAGAGAAAAGGCACACCAGATTCCCCTGCAGTCGCTTTTGCTAGAAG 7258 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||||| ||||| || || || || | || ||| | || ||||| | ||||||||| Sbjct 7257 AGTCTTTCCTGTACCTGGGGGACCTACCAAGAGAGCACCTTTTGGAATTTTTGCCCCTAA 7198 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | || |||||||| ||| |||||| || | |||| |||| | || | || || Sbjct 7197 ATCCTCATATTTCTTTGGGTTCTTTAGGAAGTGCACAAATTCCATGATCTCTTGCTTCGC 7138 Query 289323 CTCATCACATCCTGCTACATC 289343 ||||||||| || || ||||| Sbjct 7137 CTCATCACAGCCAGCAACATC 7117 >seq10933 Length=18736 Score = 96.9 bits (106), Expect = 1e-14 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 301830 GGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAG 301889 |||||||||| | || || || ||| || |||||||||| | ||||| |||||||| Sbjct 12618 GGGAACACCAAGAGTGACATTCT--TTGCACT-AACACCAGCATAATGGAAGGTATTCAG 12674 Query 301890 AGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCC 301949 ||| | || |||| |||||||||||| |||||| |||| ||||| |||||| || Sbjct 12675 AGTCATCTGTGTAGCAGGCTCACCAATAGATTGTGCAGCAACACAACCAATCATTTCCCC 12734 Query 301950 TGGTGCTACAATAGACT 301966 |||||||||| |||| Sbjct 12735 AGGTGCTACAAGTGACT 12751 >seq81509 Length=996 Score = 91.5 bits (100), Expect = 4e-13 Identities = 226/341 (66%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 288888 TATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATC 288947 |||||| ||||||||||| | || | ||| || | |||| || || ||||| Sbjct 115 TATATCCGCTCTGTTTGTGCCAGCTAGTACGACGACCTGCTCGGAAGTGTTGAAACCATC 174 Query 288948 CATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCT--TGAA 289005 ||| || | || ||||| ||||| ||| || ||||| || ||| | |||| Sbjct 175 CATCTCGGTCAGGATCTGATTCAGTGTCGCTTCTCTCTCATCGTTGCCACCACCACTGAA 234 Query 289006 TCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACAC 289065 | ||| | | ||| ||| || | |||||||||||||||||||| || | || Sbjct 235 TTTACCGCTAC--TTCTTGATTTGCCGATTGCATCAATTTCGTCAATGAATATGATGCAA 292 Query 289066 GGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACA 289125 || | || | | |||| | || | || | || || || || |||| ||| || Sbjct 293 GGCGTGTTCTTACGCGCATTCTGGAAGAGATCGCGCACTCGAGACGCACCAACACCGACG 352 Query 289126 TACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCT 289185 ||||||| ||||| || || | || || | ||||| ||| | ||| |||||| Sbjct 353 AACATTTCAACAAACTCCGATCCAGAGACGGAGAAGAATGGCACACCAGATTCACCTGCT 412 Query 289186 ACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 ||| ||||||| ||||||||||| || || |||||||| Sbjct 413 GTCGCCTTCGCCAGTAGTGTCTTACCGGTACCTGGTGGTCC 453 >seq33353 Length=2925 Score = 87.8 bits (96), Expect = 5e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || |||||||| ||| ||||||||||| || |||||||| | || || | ||| Sbjct 1586 TGTGCAATAGTCATTCGAGACGGAATAGCATGAGGGTTGATGATCAGATCCGGGGTTAGT 1645 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 ||||| || ||||| |||||||||| || || || || | || || || ||||| || Sbjct 1646 CCATCTGCTGTGAACGGCATATCCTCTT-GTCTGTAGGTGATGCCGATGGTACCCTTCTG 1704 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| || ||| || || ||||| Sbjct 1705 CCCGTGACGTGAGGCGAATTTGTCCCCAAT 1734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469298423657493