Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021347.1 Length=142563 Score E Sequences producing significant alignments: (Bits) Value seq76217 149 6e-31 seq87011 123 2e-23 seq60473 89.7 5e-13 >seq76217 Length=1109 Score = 149 bits (164), Expect = 6e-31 Identities = 208/290 (72%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGG---ACCGCAT 105091 ||||||||| |||||| |||||||||||||| || ||| ||||| |||| || |||| Sbjct 888 CTTCGCCGGCTACTTCCTCGTCGTCGCCGACTTCATCAACTGGGCCAAGGAGAACGGCAT 829 Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151 | |||||||| ||||| || |||| || ||||| | | | ||||| |||| || Sbjct 828 CCGTGTCGGTCCGGGCCGCGGGTCGGGCGCCGGCTCCATGGCCGCGTACGCGATGCGGAT 769 Query 105152 CACCGAGCTCGACCCGAT-CAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGC 105210 |||||| ||||||||| | || ||| |||||| |||||||||||| || || || | Sbjct 768 CACCGACCTCGACCCGCTGCAGCCACGGCCTGATCTTCGAGCGGTTCCTCAACCCCGACC 709 Query 105211 GGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCG 105270 | | |||||| |||| |||||||| || || |||||||||||| || Sbjct 708 GCGTCTCGATGCCCGACTTCGACATCGACTTCGACGAGCGCCGCCGCGGCGAGGTCATCC 649 Query 105271 ACTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 |||| || | | |||||| | ||| ||||| || ||||| |||| Sbjct 648 GCTACGTCACGCAGAAGTACGGCGAGGACCGCGTCAGCCAGATCGTCACC 599 >seq87011 Length=895 Score = 123 bits (136), Expect = 2e-23 Identities = 201/289 (70%), Gaps = 3/289 (1%) Strand=Plus/Plus Query 105035 CTTCGCCGGGTACTTCAACGTCGTCGCCGACTACACCAAGTGGGCTAAGGACC---GCAT 105091 |||| |||| |||||| ||||||||||||| || ||| ||| | ||| ||| |||| Sbjct 10 CTTCCCCGGCTACTTCCTGGTCGTCGCCGACTTCATCAACTGGTCGAAGAACCACGGCAT 69 Query 105092 GCTCGTCGGTCCCGGCCGTGGTTCGGCCGGTGGCTCGCTCGTCTCGTACCTGATGGACAT 105151 | ||||| |||||||| || || | || |||||| | | ||||| |||| || Sbjct 70 CCGGGTCGGCCCCGGCCGCGGGTCCGGCGCCGGCTCGATGGCGGCGTACGCGATGCGGAT 129 Query 105152 CACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTCATCTCGCCGGAGCG 105211 |||||| || |||||| | || ||| ||||| |||||||||||| | || || || Sbjct 130 CACCGACCTGGACCCGCTGCAGCACGGGCTGATCTTCGAGCGGTTCCTGAACCCCGACCG 189 Query 105212 GAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGCGGCGAGGTCGTCGA 105271 | |||||| |||| |||||||| || || |||| |||||| | | Sbjct 190 CGTCTCGATGCCCGACTTCGACGTCGACTTCGACGAGCGCCGGCGCGACGAGGTGCTGAA 249 Query 105272 CTACATCGCCGACCGCTACGGCCACGACTGCGTCTGCTCGATCGGCACC 105320 ||| || |||| |||||| ||||| ||||| || ||||| |||| Sbjct 250 GTACGTCACCGAGAAGTACGGCGACGACCGCGTCCGCCAGATCGTCACC 298 >seq60473 Length=1647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 105138 TACCTGATGGACATCACCGAGCTCGACCCGATCAAGTACGACCTGATGTTCGAGCGGTTC 105197 ||| || | | |||||||| | |||| || |||| |||||||| |||||||||||||| Sbjct 217 TACGTGCTCGGCATCACCGCGGTCGATCCCTCCAAGCACGACCTGCTGTTCGAGCGGTTC 276 Query 105198 ATCTCGCCGGAGCGGAAGAACTTCCCCGACATCGATCTCGACTTCCCGCAGAAGCGTCGC 105257 | ||| || ||| || | || |||||||| | || ||| ||| |||| ||| Sbjct 277 GTGTCGGCGTCGCGCAACGAGCCGCCGGACATCGACGTGGATTTCGAGCACGAGCGGCGC 336 Query 105258 GGCGAGGTCGTCGACTACATCGCCGACCGCTACGGCC 105294 | ||||| || | ||||| |||||||||||||| Sbjct 337 GAGGAGGTGATCCAGCACATCTACGACCGCTACGGCC 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455312019798120