Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021533.1 Length=45942 Score E Sequences producing significant alignments: (Bits) Value seq103996 84.2 6e-12 seq37623 84.2 6e-12 seq105772 80.6 8e-11 seq95548 80.6 8e-11 >seq103996 Length=666 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 3884 GGCGCGTAGCTCAATTGGTAGAGCGGCGGTCTCCAAAGCCGCTGGCTGCAGGTTCGAGTC 3943 |||| || |||||||||||||||| |||||||||||| |||| || |||||||||||||| Sbjct 460 GGCG-GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTC 402 Query 3944 CTG-CCGC 3950 ||| |||| Sbjct 401 CTGTCCGC 394 >seq37623 Length=2350 Score = 84.2 bits (92), Expect = 6e-12 Identities = 61/68 (90%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 3884 GGCGCGTAGCTCAATTGGTAGAGCGGCGGTCTCCAAAGCCGCTGGCTGCAGGTTCGAGTC 3943 |||| || |||||||||||||||| |||||||||||| |||| || |||||||||||||| Sbjct 1365 GGCG-GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTC 1307 Query 3944 CTG-CCGC 3950 ||| |||| Sbjct 1306 CTGTCCGC 1299 >seq105772 Length=647 Score = 80.6 bits (88), Expect = 8e-11 Identities = 60/68 (88%), Gaps = 2/68 (3%) Strand=Plus/Minus Query 3884 GGCGCGTAGCTCAATTGGTAGAGCGGCGGTCTCCAAAGCCGCTGGCTGCAGGTTCGAGTC 3943 |||| || |||||||||||||||| |||||||||||| |||| || ||||||||| |||| Sbjct 560 GGCG-GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTC 502 Query 3944 CTG-CCGC 3950 ||| |||| Sbjct 501 CTGTCCGC 494 >seq95548 Length=770 Score = 80.6 bits (88), Expect = 8e-11 Identities = 136/195 (70%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 32337 GTGCCGGTGGCGTTCCAGCTCG---GTCAGGACCGACCGGCTGGCCTCGATGTAGAACGT 32393 |||||||||||| |||||||| ||||| ||||||| | | || || | || | Sbjct 9 GTGCCGGTGGCGGACCAGCTCGTGGGTCAG---CGACCGGGAGACACCGGTGAGGTACAT 65 Query 32394 CG---CGCTGGCGTGCTCCAGGACGCTCTCATGGCCCACGTCGAGGATGTGGGCGAGGTA 32450 || ||||| ||||||| ||||| || ||||| ||||||||||| ||||| Sbjct 66 CGACACGCTGCCGTGCTCGAGGACCGAGAGGTGCCCCACCTCGAGGATGTGCCGCAGGTA 125 Query 32451 GTCCTCGTTCTCGGCCGTGGCCGGGTTCGGCCGGTTGAAGGACCGGTAGCAGTTCCGGCC 32510 | | |||| |||||| |||||| ||| | | ||| |||||||| ||| || Sbjct 126 GCCGGCGTTGGTGGCCGTCTGCGGGTTGGGCTTGCCCCACGACTGGTAGCAGGCCCGCCC 185 Query 32511 CGCGAACTCCGCGAG 32525 ||||||||||| || Sbjct 186 GGCGAACTCCGCCAG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146659773760672