Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq85577 136 1e-27 seq65589 109 2e-19 seq69917 98.7 3e-16 >seq85577 Length=924 Score = 136 bits (150), Expect = 1e-27 Identities = 252/363 (69%), Gaps = 5/363 (1%) Strand=Plus/Plus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCA-TTGAAGCCGTTCAACACCACTT 31502 ||||||||| | | ||||||||||||||| | ||| ||||| || | || ||| | | Sbjct 445 GCCACCGCCGGGCCCGTCGAGCATGGTCAG-GACGCTGTTGAACCCCTGCAGCACGATCT 503 Query 31503 CGGTTGTGTAGCGATCACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCC 31561 |||| |||| || || | | || | |||||| |||||||| |||||| |||| Sbjct 504 CGGTGCTGTACTTGTCCTGGCCCTGCTGA-TCCTGCCATTTGCGGGTCTGCAGCGCGCCC 562 Query 31562 TCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCG 31621 |||||||||||||| || ||||| |||| | ||||| || ||| |||| |||||| Sbjct 563 TCGATGTAAACCTTGGACCCCTTGCGCAGGAAACGCTCGGCGACGTTGGCGAGGCCTTCG 622 Query 31622 GTGAAGACGACGACGCTATGCCACTCGGT-GCGCTCCTTGCGGTCGCCGCTGTCGCGGTC 31680 |||||| |||| |||||| ||||| |||||||| |||||| | |||||| Sbjct 623 TTGAAGATCGCGACCGAATGCCATTCGGTCTTTTTCCTTGCGCTCGCCGGAATTGCGGTC 682 Query 31681 GCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTT 31740 ||| ||| ||||| | ||| ||| | ||| | || ||| || | Sbjct 683 CTTCCACGACTCGCTGGTCGCGATGCGCAGGTTCACGACCTTGCCGCCGTTCTGGAACGA 742 Query 31741 TCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGC 31800 || ||| |||||| ||||||| ||||| | ||||| ||||||||||| || || Sbjct 743 GCGCGATTCGGGATCGCGCCCGAGATTGCCGACGATGATGACCTTGTTGACGCTGCCCGC 802 Query 31801 CAT 31803 ||| Sbjct 803 CAT 805 >seq65589 Length=857 Score = 109 bits (120), Expect = 2e-19 Identities = 251/367 (68%), Gaps = 12/367 (3%) Strand=Plus/Minus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGC-ATTGAAGCCGTTCAACACCACTT 31502 ||||||||| | | |||||| || |||||| |||| | ||| | | | |||||| | Sbjct 452 GCCACCGCCGCGCCCGTCGAGGATCGTCAGC-TCGCCACGGAATCGCTGGAGCACCACCT 394 Query 31503 CGGTTGTGTAGCGATCACCACCGTCGGAGTGCTG---CCACTTGCGGGTTTGCAGCTTGC 31559 |||| ||||| || | || | |||| || | |||||| ||||| |||| || | Sbjct 393 CGGTGGTGTACT--TCTCGAC-GCCGGACTGGTCGGTCCACTTCCGGGTCTGCAACTGAC 337 Query 31560 CCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCG-CAAACCTTGACGAGACCT 31618 | |||||||| |||||||| ||||| |||||| |||||| | | || ||| || Sbjct 336 CTTCGATGTAGACCTTCGAGCCCTTGCGCAGGTACTGCTCGGCCACCCGGGAC-AGGTTG 278 Query 31619 TCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGG 31678 ||| || ||| ||||| ||||||||||| ||||||||| |||||| | | | Sbjct 277 TCGTTGTAGATCACGACCGAGTGCCACTCGGTCTTCTCCTTGCGCTCGCCGGAGGCCTTG 218 Query 31679 TCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGA-TGCTACCCCCGGCTTGTGT 31737 || ||| || || ||||| | || ||| || || | | |||| | | Sbjct 217 TCCTTCCACGACTCCGAGGTCGCGATCCGCAGGTTGCAGACCGGATCGCCCGAGCCGAGG 158 Query 31738 CTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACC 31797 | ||||| ||||| ||| ||||||| ||| | ||||| || ||||||||||| || Sbjct 157 C-GGCGGATCTCCGGGTCGCGCCCGAGATTGCCCACCAGAATCACCTTGTTGACGCTGCC 99 Query 31798 GGCCATC 31804 |||||| Sbjct 98 CGCCATC 92 >seq69917 Length=1281 Score = 98.7 bits (108), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 28523 GCGCTGCCGGCATCAGGATTGGTCACGAGAAGCTTCAGGGTGCCTTCGGAGAAGTGGAAC 28582 |||||||| | ||| || ||| | || |||| |||| || |||| || || | Sbjct 939 GCGCTGCCCGAATCCGGGTTGTTGACCGAAAGCGCCAGGCGCCCCTCGGTGAGCCCGAGC 998 Query 28583 TTCATCGCCCGGCCGCGCTCGGTTGAAACCGACGACACACGGTCAACGGCCGAGGCGATT 28642 |||| || ||||||||||||| || | || ||| || ||||| || ||| ||||| Sbjct 999 TTCACGGCGCGGCCGCGCTCGGACGAGATCGTCGAGACCCGGTCCACCGCCTTGGCGAAG 1058 Query 28643 GCTTTGGCGTCCGCCGTCACGTCGGTGGCATTGTTGGCTGGGATGACCCGGACGTAGTCC 28702 | | | || | || | | || | |||||||| ||||| ||||| ||||||| Sbjct 1059 ACGTCGCGCTCGACGGTGAGGCGCTTGTCGTTGTTGGCCGGGATCACCCGCTGGTAGTCC 1118 Query 28703 GGGAACGTGCCGTCGATCAGTTTCGATACGAGGCGCGTCCCGCCGACGGTGAA 28755 ||||| |||||||||||||| ||||| | ||| ||| |||| ||| ||| Sbjct 1119 GGGAAGGTGCCGTCGATCAGCTTCGAGATCAGG---GTCAGGCCGCCGGCGAA 1168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169535426865552