Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_021560.1
Length=53102
Score E
Sequences producing significant alignments: (Bits) Value
seq85577 136 1e-27
seq65589 109 2e-19
seq69917 98.7 3e-16
>seq85577
Length=924
Score = 136 bits (150), Expect = 1e-27
Identities = 252/363 (69%), Gaps = 5/363 (1%)
Strand=Plus/Plus
Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGCA-TTGAAGCCGTTCAACACCACTT 31502
||||||||| | | ||||||||||||||| | ||| ||||| || | || ||| | |
Sbjct 445 GCCACCGCCGGGCCCGTCGAGCATGGTCAG-GACGCTGTTGAACCCCTGCAGCACGATCT 503
Query 31503 CGGTTGTGTAGCGATCACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCC 31561
|||| |||| || || | | || | |||||| |||||||| |||||| ||||
Sbjct 504 CGGTGCTGTACTTGTCCTGGCCCTGCTGA-TCCTGCCATTTGCGGGTCTGCAGCGCGCCC 562
Query 31562 TCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCG 31621
|||||||||||||| || ||||| |||| | ||||| || ||| |||| ||||||
Sbjct 563 TCGATGTAAACCTTGGACCCCTTGCGCAGGAAACGCTCGGCGACGTTGGCGAGGCCTTCG 622
Query 31622 GTGAAGACGACGACGCTATGCCACTCGGT-GCGCTCCTTGCGGTCGCCGCTGTCGCGGTC 31680
|||||| |||| |||||| ||||| |||||||| |||||| | ||||||
Sbjct 623 TTGAAGATCGCGACCGAATGCCATTCGGTCTTTTTCCTTGCGCTCGCCGGAATTGCGGTC 682
Query 31681 GCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTT 31740
||| ||| ||||| | ||| ||| | ||| | || ||| || |
Sbjct 683 CTTCCACGACTCGCTGGTCGCGATGCGCAGGTTCACGACCTTGCCGCCGTTCTGGAACGA 742
Query 31741 TCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGC 31800
|| ||| |||||| ||||||| ||||| | ||||| ||||||||||| || ||
Sbjct 743 GCGCGATTCGGGATCGCGCCCGAGATTGCCGACGATGATGACCTTGTTGACGCTGCCCGC 802
Query 31801 CAT 31803
|||
Sbjct 803 CAT 805
>seq65589
Length=857
Score = 109 bits (120), Expect = 2e-19
Identities = 251/367 (68%), Gaps = 12/367 (3%)
Strand=Plus/Minus
Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGC-ATTGAAGCCGTTCAACACCACTT 31502
||||||||| | | |||||| || |||||| |||| | ||| | | | |||||| |
Sbjct 452 GCCACCGCCGCGCCCGTCGAGGATCGTCAGC-TCGCCACGGAATCGCTGGAGCACCACCT 394
Query 31503 CGGTTGTGTAGCGATCACCACCGTCGGAGTGCTG---CCACTTGCGGGTTTGCAGCTTGC 31559
|||| ||||| || | || | |||| || | |||||| ||||| |||| || |
Sbjct 393 CGGTGGTGTACT--TCTCGAC-GCCGGACTGGTCGGTCCACTTCCGGGTCTGCAACTGAC 337
Query 31560 CCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCG-CAAACCTTGACGAGACCT 31618
| |||||||| |||||||| ||||| |||||| |||||| | | || ||| ||
Sbjct 336 CTTCGATGTAGACCTTCGAGCCCTTGCGCAGGTACTGCTCGGCCACCCGGGAC-AGGTTG 278
Query 31619 TCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGG 31678
||| || ||| ||||| ||||||||||| ||||||||| |||||| | | |
Sbjct 277 TCGTTGTAGATCACGACCGAGTGCCACTCGGTCTTCTCCTTGCGCTCGCCGGAGGCCTTG 218
Query 31679 TCGCGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGA-TGCTACCCCCGGCTTGTGT 31737
|| ||| || || ||||| | || ||| || || | | |||| | |
Sbjct 217 TCCTTCCACGACTCCGAGGTCGCGATCCGCAGGTTGCAGACCGGATCGCCCGAGCCGAGG 158
Query 31738 CTTTCGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACC 31797
| ||||| ||||| ||| ||||||| ||| | ||||| || ||||||||||| ||
Sbjct 157 C-GGCGGATCTCCGGGTCGCGCCCGAGATTGCCCACCAGAATCACCTTGTTGACGCTGCC 99
Query 31798 GGCCATC 31804
||||||
Sbjct 98 CGCCATC 92
>seq69917
Length=1281
Score = 98.7 bits (108), Expect = 3e-16
Identities = 162/233 (70%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 28523 GCGCTGCCGGCATCAGGATTGGTCACGAGAAGCTTCAGGGTGCCTTCGGAGAAGTGGAAC 28582
|||||||| | ||| || ||| | || |||| |||| || |||| || || |
Sbjct 939 GCGCTGCCCGAATCCGGGTTGTTGACCGAAAGCGCCAGGCGCCCCTCGGTGAGCCCGAGC 998
Query 28583 TTCATCGCCCGGCCGCGCTCGGTTGAAACCGACGACACACGGTCAACGGCCGAGGCGATT 28642
|||| || ||||||||||||| || | || ||| || ||||| || ||| |||||
Sbjct 999 TTCACGGCGCGGCCGCGCTCGGACGAGATCGTCGAGACCCGGTCCACCGCCTTGGCGAAG 1058
Query 28643 GCTTTGGCGTCCGCCGTCACGTCGGTGGCATTGTTGGCTGGGATGACCCGGACGTAGTCC 28702
| | | || | || | | || | |||||||| ||||| ||||| |||||||
Sbjct 1059 ACGTCGCGCTCGACGGTGAGGCGCTTGTCGTTGTTGGCCGGGATCACCCGCTGGTAGTCC 1118
Query 28703 GGGAACGTGCCGTCGATCAGTTTCGATACGAGGCGCGTCCCGCCGACGGTGAA 28755
||||| |||||||||||||| ||||| | ||| ||| |||| ||| |||
Sbjct 1119 GGGAAGGTGCCGTCGATCAGCTTCGAGATCAGG---GTCAGGCCGCCGGCGAA 1168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169535426865552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |