Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11270 212 8e-49 seq70225 118 1e-20 seq79654 111 2e-18 seq67176 107 2e-17 seq35533 107 2e-17 seq36801 105 8e-17 seq57685 93.3 5e-13 seq99200 86.0 8e-11 >seq11270 Length=18388 Score = 212 bits (234), Expect = 8e-49 Identities = 225/294 (77%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||| || ||||||||||| || || || | |||| | |||||| Sbjct 5788 GAGTGGATATTCTCGATCGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCCGAAACTTGG 5847 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| Sbjct 5848 ACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAG 5907 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||| ||||| | |||| ||||| | || |||||| |||| Sbjct 5908 AAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGGTTTTCCCAGT-GACG 5966 Query 869813 -GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 |||| || ||| || |||||||| |||||||||| ||||||||||||||| ||||| Sbjct 5967 TAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGGCCTCGGCCTTCTTGTA 6026 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||||||||| | | | |||| | || ||||| | | || |||| ||||| Sbjct 6027 CATCTCCCAGATCTCCGGGTACTGAATCGGGAACATGCAGAACCGGTCCGGGTT 6080 Score = 107 bits (118), Expect = 2e-17 Identities = 213/314 (68%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | |||||| || |||||||| || | | ||| ||| Sbjct 5194 GCCTTCTGGTACTCCCCAACTCTCTTCTCGAAGAAATTGGTCTTTCCTTGCAACGAAATC 5253 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| || ||||| | |||||| || | || || | || | Sbjct 5254 AGCTCCATCCAATCAAATGGGTTCTGAACATTGTAGATTTTGCCACACCCCAACGCGCCC 5313 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | ||| || ||||||||||||||||||| ||| || || ||||||| || | Sbjct 5314 AAAAGCCTGTCAGCCACAAACTCGATGTACTGGCTCATCAGATCGCCGTTCATCCCAACC 5373 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG---ACG 868927 | ||| ||||||| |||| ||||||||| |||| || || || || ||| ||| Sbjct 5374 AACGCGCAGGGCAGCGCGTCGCACACAAACTCCCTCTCTATATCCACCGCGTCGCGAACG 5433 Query 868928 ATGATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || || | | || | ||| | |||| ||| | | |||||||||||||| Sbjct 5434 ATCCCCTTCACGCGCTCCTCGCTC---AGCTTCTTGCGCAAGAGAGTGTAGAGCAGGCAC 5490 Query 868988 GCAAAGTCGCAGTG 869001 || || |||||||| Sbjct 5491 GCGAAATCGCAGTG 5504 >seq70225 Length=1269 Score = 118 bits (130), Expect = 1e-20 Identities = 270/395 (68%), Gaps = 20/395 (5%) Strand=Plus/Plus Query 96704 CTGCGCGCCCGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGAC-CTACG 96762 |||| | |||||||||||| ||||| | ||| ||| || | ||||| || | Sbjct 2 CTGCACCCCCGGCAGCGTCACGGTGCC------CGACCTCATGACGGTCGAGACGCTGC- 54 Query 96763 CCGCCGTGCACCAGATGGTGACCACCGT-CGACGGCCTGCTCGACCGCGGCCG-GACGGC 96820 || ||||||||||| | || |||||||| || ||| | | | | ||| | | |||| Sbjct 55 CCACCGTGCACCAGCTCGTCACCACCGTGCGGGGGC--GGTTGCGCCCGGAGGTGTCGGC 112 Query 96821 GCTCGACCTCGTGCGC-GCGGCCTTTCCGCCGGGCTCGATGACGGGCGCGCCCAAGGCGC 96879 | | ||| | ||||| || || || ||||| |||||||||||||| || || ||| | Sbjct 113 GGTGGACTGCCTGCGCAGCTGC-TTCCCGCCCGGCTCGATGACGGGGGCCCCGAAGCTCC 171 Query 96880 GCAGCATGGAGATTCTCGATCGCCTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGGCG 96939 | | | |||||| ||||| ||| | |||| || | || ||||||||||| || Sbjct 172 GGACGACGGAGATCATCGATGCCCT---GGAGCAGCGGGCCCGGGGGATCTACTCCGGGA 228 Query 96940 CGCTGGGCtttttttCGGCCGACGGCGCCTGCAGCCTGTCGGTGGTGATCCGCACGGCCG 96999 || | |||| || || || ||| || | ||| | || || |||||||| |||| Sbjct 229 CGATCGGCTGGTTCTCCACCACCGGGGCGGCCGACCTCGCCGTCGTCATCCGCACCGCCG 288 Query 97000 TCATCGACGCGGACGGCTCGGCGTCGGTGGGCTGCGGCGGCGCCATCGTCGCCGACTCGG 97059 || ||| | | || |||| ||| || |||||||| ||||| ||| || | Sbjct 289 TCCTCG-TGGGCCAGGAGTGGCG--GGTCGGGGCGGGCGGCGCGATCGTGCTCGATTCCG 345 Query 97060 ACCCCGACGCCGAGTTTGCCGAGATTGTGCTCAAG 97094 |||| ||||||||| | |||||| | |||| ||| Sbjct 346 ACCCGGACGCCGAGGTCGCCGAGGTGCTGCTGAAG 380 >seq79654 Length=1036 Score = 111 bits (122), Expect = 2e-18 Identities = 336/499 (67%), Gaps = 35/499 (7%) Strand=Plus/Plus Query 1627023 GCGCAGATAGTACATGCCGGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGT 1627082 |||||| |||||| | |||||||| ||| ||||||||| || |||||| | Sbjct 194 GCGCAGGTAGTACGTC---GTCTTGAGCCCGGACTTCCACGCGTACAGGTACATCGAGCT 250 Query 1627083 GATGC--GCTCGGGCGTCGCGTCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACA 1627140 || || || || || || |||| | ||||||||||||||||||||||||||| Sbjct 251 GA-GCTTGC-CGATCGACGGCGAGGCGAGGAACAGGTTGAGCGACTGGCTCTGGTCGATG 308 Query 1627141 TAGGGCGCGCGATCGGCCGCCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTC 1627200 || |||| || | ||||| | ||||||| || | |||| |||||| | || Sbjct 309 TACGGCGACCGCGCCGCCGCGAGGTCGATGAGCGCCTTCTGCGGCAGTTCCCACGCCGTG 368 Query 1627201 TTGAAGATGGCCTTGAGGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCG 1627260 | |||| ||||||| |||| |||| | || || | ||||||||||| || Sbjct 369 CGGTAGATCGCCTTGACGTCGTCGGGCAGCCCGACG------AGCCCCTGCACCGACCCC 422 Query 1627261 T-GCGCCGC--GACGAGCCTGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAG- 1627316 | | ||| |||| || |||||| |||| |||||| || ||| ||||| | || Sbjct 423 TCGGAACGCTTGACG-GC--GTCGCGGGTCTCGGCCGTCCAGAGCCCGAGCGCCTTGAGC 479 Query 1627317 --GCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTG 1627374 |||| ||||| || ||||||| || || ||||||||| |||| || Sbjct 480 TCGCGC---ACCAGCGAGCTGTTGACCTGCAGGAACTCCCCCGAGAGCGTCTCGCGCTTG 536 Query 1627375 TAGATGTTG--TTGGTGATGACCTCGCACGC-CTCGGTGTTGCCCAGGATCTGCGACG-T 1627430 | | |||| || | |||| | || |||| | |||| |||| | | || | Sbjct 537 AACAGGTTGGACACCTGCGG--CTCG-ATGCACTCGTAGCAGCCCGCGATC-GAGGCGAT 592 Query 1627431 CGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGCC-GTGCTGTCGAACTA 1627489 ||| ||||| ||| || ||| ||||| ||||||||||||||||| ||| || | || Sbjct 593 CGTCGCCGTCGGCGCGATCGCGACGAGCAGCGAGTTGCGCAGGCCGGTGGTGGC-CACCC 651 Query 1627490 GCGCGCGCAGCGCGTCCCA 1627508 | | |||||||||||||| Sbjct 652 GTTCCCGCAGCGCGTCCCA 670 >seq67176 Length=1372 Score = 107 bits (118), Expect = 2e-17 Identities = 215/303 (71%), Gaps = 27/303 (9%) Strand=Plus/Plus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTG-AGCGTGTGCTGCGCGCC 96712 ||||||||||| ||||||||||||||| |||||||||||||| ||| || | ||||| Sbjct 362 GCCGAGAACCTGATGATCGTCGACCTGATGCGCAACGACCTGTCGCGGGT-CGCGGCGCC 420 Query 96713 CGGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCA 96772 |||||||||| |||||| | ||| | || | ||||||| || || | || Sbjct 421 GGGCAGCGTCGCGGTGCCGGC------GCTGTTCACGGTGGAGACCTTTCCCACCATCCA 474 Query 96773 CCAGATGGTGACCAC---CGTCGACGGCCTGCTCGACCGCGGCCG-GACGGCGCTCGACC 96828 ||||| ||||| | ||||| || | |||| || || | ||| ||| |||| Sbjct 475 CCAGA---TGACCTCTGACGTCGTCGCTCGCCTCGCCCCGGGTTGCGAC-GCGATCGA-- 528 Query 96829 TCGTGCGCGCGGC-CT-TTCCGCCG-GGCTCGATGACGGGCGCGCCCAAGGCGCGCAGCA 96885 |||| || ||| || |||| | | |||||||| || |||||||||||| |||| | Sbjct 529 -CGTGATCGAGGCGCTGTTCCCCTGCGGCTCGATCACCGGCGCGCCCAAGCTGCGCGCGA 587 Query 96886 TGGAGATTCTCGATCGC-CTCGAGAAGCACCGCCCGCGCGGGATCTACTCGGGCGCGCTG 96944 || || | ||| ||| ||||| || | ||||||||| ||||| | |||||| | Sbjct 588 TGCAGGTCATCG-CCGCGGTCGAG-GGCGC--CCCGCGCGGCGTCTACACCGGCGCGATC 643 Query 96945 GGC 96947 ||| Sbjct 644 GGC 646 >seq35533 Length=2598 Score = 107 bits (118), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 868721 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTC 868780 || |||||||||||||| | |||||||| ||||| | ||| || | Sbjct 2243 AAGAAGTTGGTCTTGCCATTCAGCGAGATGTTGTCCATGAAATCGAATGGACATGTAACG 2302 Query 868781 TTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTAC 868840 |||||||||||| | ||||| | |||| |||||||| ||||| || ||||||||| Sbjct 2303 TTGTAGTGCTTTGTGAGACCGAGGGCGACGAGAAGGCGGTCTGCGACGAATTCGATGTAC 2362 Query 868841 TGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAAC 868900 |||||||| || |||||||||||||| || || ||||| | || | | ||| Sbjct 2363 TGGCACATAAGTGTGGCGTTCATGCCGAGTAGGGCACAGGGCAGAGCATCAGTGAGGAAC 2422 Query 868901 TCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 |||| |||||| |||||||||| |||||| Sbjct 2423 TCTTGCTCGATGGCGACGGCCTCTGTGATGAT 2454 >seq36801 Length=2667 Score = 105 bits (116), Expect = 8e-17 Identities = 165/228 (72%), Gaps = 21/228 (9%) Strand=Plus/Plus Query 96654 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCC 96713 ||||||||| ||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 1452 GCCGAGAACGTCATGATCGTCGACCTGCTGCGCAACGACCTGTCCCGGGTCTGCGCGCCG 1511 Query 96714 GGCAGCGTCGTCGTGCCGCCCGGCCGCCTGATGGCGATTGAGACCTACGCCGCCGTGCAC 96773 |||||||||| |||||| | |||| | | | |||||||||||| ||| ||| Sbjct 1512 GGCAGCGTCGCCGTGCC------CACCCTGTGCGGGCTGGAGACCTACGCCAACGTCCAC 1565 Query 96774 CAGAT------GGTGACCACCGTCGACGGCCTGCTCGACCGCGGCCGGACGGCGCTCGAC 96827 || | |||| |||| |||| |||| |||| ||| ||| || |||||| Sbjct 1566 CACCTCGTCTCGGTGGTGACCG-GGACG--CTGCGCGAC--GGGCTCGAC-GCCCTCGAC 1619 Query 96828 CTCGTGCGCGCGGCCTTTCCGCCG-GGCTCGATGACGGGCGCGCCCAA 96874 ||| || | | | | |||| | | |||||||| || ||||| ||||| Sbjct 1620 CTCCTG-GAGGGCACCTTCCCCGGAGGCTCGATCACCGGCGC-CCCAA 1665 >seq57685 Length=1792 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| ||||| || |||||||| || || ||| ||||||||||||||||||||| | Sbjct 1289 TCCAGAGTGCATAGAAGAGGTCACGAGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGAA 1348 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 | || || || ||| | || |||||||| ||||| ||||| |||||||||||| Sbjct 1349 GATCCAGGAAGGCGAAGACATCAGCGTGCCATGGCTCGAGGTACATGGCAAAGGCGCCGG 1408 Query 1628585 TGCGCTTGCCGCCGCC 1628600 |||||| ||| || Sbjct 1409 GACGCTTGTTGCCACC 1424 Score = 93.3 bits (102), Expect = 5e-13 Identities = 176/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || || || | ||| ||||| || ||||| || || || || ||||| Sbjct 1426 TGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGAT 1485 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||| |||||||| | | ||| | || | || || | ||| || || ||| Sbjct 1486 GTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTGAACCCG 1545 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 |||||||| || ||| ||||| | ||||| ||||| || |||||||| |||||| Sbjct 1546 ATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCCTCG 1605 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||| | ||| | ||| ||||| || | || |||| | || || Sbjct 1606 ATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCA 1665 Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324 || ||||||| || |||| Sbjct 1666 GCACTGAAGAGTGTCGGCG 1684 >seq99200 Length=725 Score = 86.0 bits (94), Expect = 8e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 |||||| || ||| ||||| |||||| || | || || |||||||| || | ||| Sbjct 234 ACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTT 293 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| || |||| | |||| || ||||| ||||||||||| |||||||| || Sbjct 294 CTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAA 353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6096176261062713