Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq10846 109 5e-19 seq13269 95.1 1e-14 seq1750 86.0 5e-12 >seq10846 Length=19378 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || || || || || ||||||||||| | || ||| Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| ||||| |||||||| || | || ||| || Sbjct 11443 TGATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACCA 11384 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || |||| ||| || || ||| |||| |||| ||||| | || |||||||| Sbjct 11383 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACAA 11324 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||||||| || || || ||||| ||||| | || ||||||| |||| Sbjct 11323 CATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGAA 11274 >seq13269 Length=14915 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || | ||||| || |||||||| | ||| ||| | Sbjct 13438 ATGCAGATTTTTGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 13497 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || ||| ||||||||||| | ||| ||||| Sbjct 13498 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 13557 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| || || || ||||| ||||||| | |||| |||| ||||||||| Sbjct 13558 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 13617 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || |||||||| Sbjct 13618 ATTCAGAAGGAATCTAC 13634 >seq1750 Length=74028 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || || |||||||| | ||| ||| | | Sbjct 61782 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATTACTCTTGAAGTTGAGAGTTCC 61841 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||| ||| |||||||||||| | ||| ||||| Sbjct 61842 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 61901 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| || || || || ||||||| | |||| |||| ||||| ||| Sbjct 61902 CAGAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGCCGAACTCTGGCCGATTATAAC 61961 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| || || ||||| Sbjct 61962 ATTCAGAAGGAGTCTAC 61978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412169446011377