Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022055.1 Length=59179 Score E Sequences producing significant alignments: (Bits) Value seq81249 176 2e-39 >seq81249 Length=1001 Score = 176 bits (194), Expect = 2e-39 Identities = 222/301 (74%), Gaps = 12/301 (4%) Strand=Plus/Minus Query 44714 CGATCAGGTGACGCTCTACCACGGCGACTGCCTGCACGTGCTCGCCGAGCTGCCCGATCG 44773 ||| || | ||||||||||| |||||||||||| |||| ||| |||||||||| | Sbjct 301 CGAGCACGCGACGCTCTACCTCGGCGACTGCCTCGACGTCCTCCGGAAGCTGCCCGACGG 242 Query 44774 CAGCGTCGACGCCGTGGTTTGCGACCCACCCTACGAGCTGGAGTTCATGGGCAAGAAGTG 44833 |||||| ||||||| || ||| || ||||||| || || ||||||||| | || Sbjct 241 CAGCGTGCACGCCGTCGTCACCGATCCGCCCTACGCCCTCGACTTCATGGGCCACGGCTG 182 Query 44834 GGACGGCTCGGGCATCGCC---TTCGAC-----GT-CGAGATGTGGAA-GC--AATGCCT 44881 ||| ||| | || | ||| | || |||| |||| || | ||||| Sbjct 181 GGATCGCTACACCCCCGGCGAGTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCCT 122 Query 44882 GCGGGTCCTCAAACCCGGTGGGCACCTGCTCGCCTTCGGCGGCTCCCGCACCTGGCACCG 44941 || ||||||||||||| ||||| || |||||||||||||| | ||||||| ||||| Sbjct 121 CCGCATCCTCAAACCCGGCGGGCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACCG 62 Query 44942 GCTCGCGTCGGCCATCGAGGACGCGGGCTTCGAGATCCGCGACTCCATCGCCTGGCTCTA 45001 ||||| | | ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct 61 CCTCGCTGCCGGAATCGAGGACGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCTA 2 Query 45002 C 45002 | Sbjct 1 C 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188950977692138