Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq58751 105 5e-18 seq111358 95.1 8e-15 seq69458 86.0 4e-12 >seq58751 Length=1734 Score = 105 bits (116), Expect = 5e-18 Identities = 198/286 (69%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 95060 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 95119 |||||| | | | | ||| ||| | |||| ||||||||||| || |||| |||||| Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913 Query 95120 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 95178 | || |||| | || || || | ||| ||||| | | ||||| |||| Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972 Query 95179 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 95238 ||||| | ||| |||| || || || || |||||||||||||||| || ||| || || Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032 Query 95239 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95298 || || ||||||||||| || || | || || | |||||| || |||| Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087 Query 95299 CCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 95342 ||||| |||||| ||||| || || |||||||| | |||||||| Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133 Score = 98.7 bits (108), Expect = 7e-16 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 95388 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 95444 |||||| || || ||||| ||||||| |||| | ||| ||||| ||||| Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349 Query 95445 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 95504 || | | || |||||||| || || || ||||||||||| ||| ||| | | | Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409 Query 95505 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 95564 || | |||||| |||||||||||||| | | | | | || || | |||||||| Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469 Query 95565 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCAC 95624 || || | | ||| |||||| | ||||||||||| ||||||| ||| || || Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529 Query 95625 CAGCAGGTGGGGCATTTTGGCCAGGT 95650 ||||| ||| ||||| ||| |||| Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555 >seq111358 Length=586 Score = 95.1 bits (104), Expect = 8e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 95026 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 95085 |||||||| || ||||| || | || |||| |||||||| | |||||| ||| Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123 Query 95086 CCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 95145 || | |||| || || ||| ||| |||||||||||||||||| |||||| || | Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63 Query 95146 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 95205 |||||| | ||| | |||||||| | ||||| ||||| ||||| || || ||| Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3 Query 95206 GA 95207 || Sbjct 2 GA 1 >seq69458 Length=1299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 95476 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 95535 ||||| ||||| || | ||| ||||| ||||| ||| ||||| | || | | Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767 Query 95536 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 95595 |||| || || |||| || ||| || || | ||||||||| | |||||| Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707 Query 95596 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 95652 ||||||||||| ||||| || || || || |||||||||||||| || || |||||| Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTC 650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345861578959482