Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_022066.1
Length=108297
Score E
Sequences producing significant alignments: (Bits) Value
seq58751 105 5e-18
seq111358 95.1 8e-15
seq69458 86.0 4e-12
>seq58751
Length=1734
Score = 105 bits (116), Expect = 5e-18
Identities = 198/286 (69%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 95060 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGA 95119
|||||| | | | | ||| ||| | |||| ||||||||||| || |||| ||||||
Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913
Query 95120 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 95178
| || |||| | || || || | ||| ||||| | | ||||| ||||
Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972
Query 95179 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATA 95238
||||| | ||| |||| || || || || |||||||||||||||| || ||| || ||
Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032
Query 95239 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95298
|| || ||||||||||| || || | || || | |||||| || ||||
Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087
Query 95299 CCGCC--CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 95342
||||| |||||| ||||| || || |||||||| | ||||||||
Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133
Score = 98.7 bits (108), Expect = 7e-16
Identities = 182/266 (68%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 95388 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 95444
|||||| || || ||||| ||||||| |||| | ||| ||||| |||||
Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349
Query 95445 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 95504
|| | | || |||||||| || || || ||||||||||| ||| ||| | | |
Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409
Query 95505 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 95564
|| | |||||| |||||||||||||| | | | | | || || | ||||||||
Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469
Query 95565 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCAC 95624
|| || | | ||| |||||| | ||||||||||| ||||||| ||| || ||
Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529
Query 95625 CAGCAGGTGGGGCATTTTGGCCAGGT 95650
||||| ||| ||||| ||| ||||
Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555
>seq111358
Length=586
Score = 95.1 bits (104), Expect = 8e-15
Identities = 130/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 95026 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 95085
|||||||| || ||||| || | || |||| |||||||| | |||||| |||
Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123
Query 95086 CCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 95145
|| | |||| || || ||| ||| |||||||||||||||||| |||||| || |
Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63
Query 95146 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 95205
|||||| | ||| | |||||||| | ||||| ||||| ||||| || || |||
Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3
Query 95206 GA 95207
||
Sbjct 2 GA 1
>seq69458
Length=1299
Score = 86.0 bits (94), Expect = 4e-12
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 95476 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 95535
||||| ||||| || | ||| ||||| ||||| ||| ||||| | || | |
Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767
Query 95536 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 95595
|||| || || |||| || ||| || || | ||||||||| | ||||||
Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707
Query 95596 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 95652
||||||||||| ||||| || || || || |||||||||||||| || || ||||||
Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTC 650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345861578959482
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |