Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq69458 143 2e-29 seq58751 118 7e-22 seq101272 102 6e-17 seq89170 98.7 7e-16 seq111358 89.7 4e-13 >seq69458 Length=1299 Score = 143 bits (158), Expect = 2e-29 Identities = 205/288 (71%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 95567 GGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGATC 95626 |||||||| | | |||| ||| || | ||||| |||||| || || |||||| | Sbjct 1297 GGCAGGAACAGCGCGTCGCCCTGACCGACGAGCTTCTCGGCCCCCGGCTGGTCCAGCACG 1238 Query 95627 ACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTG 95686 |||||| || | ||| || || ||||||| |||| || |||||||||| ||| Sbjct 1237 ACCCGGGAGTCCGCGAGCGAACTCGTCGCGAACGCCAGCCGCGAGGGCACGTTGGCCTTG 1178 Query 95687 ATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCG 95746 || || || || || || || |||||||| ||||| ||||| || || || || |||||| Sbjct 1177 ATGAGCCCCGTCACGACGTCGACGGAGGGGCGCTGGGTCGCGAGCACCAGGTGGATGCCG 1118 Query 95747 GCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCG 95806 || || || || ||||| |||||| ||| ||||||||| || | | || Sbjct 1117 GCGGCCCGGGCGAGCTGGGTGATGCGCTGGATGGAGGCCTCGACGTCGCGCGGGG---CG 1061 Query 95807 CCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGGG 95854 ||||||| ||||| || ||||||||||| || |||| | ||| ||| Sbjct 1060 ACCATCATCAGGTCGGCGAGCTCGTCGACGACCACCAGCAGGTACGGG 1013 Score = 86.0 bits (94), Expect = 4e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 95981 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 96040 ||||| ||||| || | ||| ||||| ||||| ||| ||||| | || | | Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767 Query 96041 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 96100 |||| || || |||| || ||| || || | ||||||||| | |||||| Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707 Query 96101 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 96157 ||||||||||| ||||| || || || || |||||||||||||| || || |||||| Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTC 650 >seq58751 Length=1734 Score = 118 bits (130), Expect = 7e-22 Identities = 201/286 (70%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 95565 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGA 95624 |||||| | | | | ||| ||| | |||| ||||||||||| || |||| |||||| Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913 Query 95625 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 95683 | || |||| | || || || | ||| ||||| | | ||||| |||| Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972 Query 95684 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 95743 ||||| | ||| |||| || || || || |||||||||||||||| || ||| || ||| Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032 Query 95744 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95803 || || ||||||||||| || || | || || | |||||| || |||| Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087 Query 95804 CCGCC--CATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGAT 95847 ||||| |||||| ||||| |||||||||||||| | |||||||| Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133 Score = 98.7 bits (108), Expect = 7e-16 Identities = 182/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 95893 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 95949 |||||| || || ||||| ||||||| |||| | ||| ||||| ||||| Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349 Query 95950 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 96009 || | | || |||||||| || || || ||||||||||| ||| ||| | | | Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409 Query 96010 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 96069 || | |||||| |||||||||||||| | | | | | || || | |||||||| Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469 Query 96070 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCAC 96129 || || | | ||| |||||| | ||||||||||| ||||||| ||| || || Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529 Query 96130 CAGCAGGTGGGGCATTTTGGCCAGGT 96155 ||||| ||| ||||| ||| |||| Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555 >seq101272 Length=699 Score = 102 bits (112), Expect = 6e-17 Identities = 226/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 98040 GAGGTAGTACGGGCGATCCAGCAGGATCGGGTCAACCTCGCCGGCCGGCACGAACTCCAC 98099 |||| |||| ||| || | | ||| |||||| | || || |||||||||||| || Sbjct 536 GAGGAAGTAGCTGCGGTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGAC 477 Query 98100 AACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCAGTAG 98159 || || ||| | | | ||| |||||| | | ||| || |||| || | Sbjct 476 GACCTCGATCTCGCGGCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGAC 417 Query 98160 GGCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCCCC 98219 | |||| ||| | ||||| || ||||| | | ||||| || |||| || ||| Sbjct 416 GACGGTGGTGCCGCCCTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCC 357 Query 98220 ACACGTCTCACAGACCTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAG 98276 ||| ||| || |||| | |||||| || |||||||||||| | ||||| || | Sbjct 356 GCACACCTCGCA---CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTG 300 Query 98277 ATGGCCCTTCAGGTCGTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAA 98336 || ||| |||||| |||| ||||| ||| | | ||||| ||||| |||| Sbjct 299 GTGCAGGCTCACGTCGTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAG 240 Query 98337 CCCGAAGTTGACCGCGCCTGTCCAAACCGCTCTCATGC 98374 ||||| ||| ||| || ||||| | ||||||||||| Sbjct 239 GCCGAACGTGATCGCCCCGGTCCAGATCGCTCTCATGC 202 >seq89170 Length=865 Score = 98.7 bits (108), Expect = 7e-16 Identities = 208/308 (68%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 98041 AGGTAGTACGGGCGATCCAGCAGGATCGGGTCAACCTCGCCGGCCGGCACGAACTCCACA 98100 |||||||| ||| ||||| |||||| ||| | || | |||| ||||||||||| || Sbjct 331 AGGTAGTAGCTGCGGTCCAGGCGGATCGTGTCGATCTGGTCGGCGGGCACGAACTCGACC 272 Query 98101 ACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCAGTAGG 98160 ||||| ||| | | | ||| |||||| || |||||| ||||| | Sbjct 271 ACGTCGATCTCGCGGCTCCGCTCGACCGGCAGCGACTTCAGGTCCTCCGGCGTCAGCACC 212 Query 98161 GCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCC--- 98217 |||| || || || | ||| | ||||| | ||| | || |||| || | | Sbjct 211 ACGGTCTGGTCGCCGGCGTCGTAGGCCTTGTC--GAT-GTCC---TGGAACTCCACGACC 158 Query 98218 ---CCACACGTCTCACAGACCTTGTGGTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCC 98274 || || |||| ||| |||||||| || || |||||||| | |||| || Sbjct 157 CGGCCGCAGATCTCGCAGCGGCGCTGGTAGCGGATGCGGCCGCCGTCGGCGTTGTGCACC 98 Query 98275 AGATGGCCCTTCAGGTCGTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACC 98334 | || | |||||||| |||||||| |||||||||| |||||| |||||||||||| Sbjct 97 TGGTGCAGCGGGAGGTCGTGGTCCTCGGTCGCCGCGTACAGCTTCACGGGCACGTTGACC 38 Query 98335 AACCCGAA 98342 | |||||| Sbjct 37 AGCCCGAA 30 >seq111358 Length=586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 95531 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 95590 |||||||| || ||||| || | || |||| |||||||| | |||||| ||| Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123 Query 95591 CCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 95650 || | |||| || || || ||| |||||||||||||||||| |||||| || | Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63 Query 95651 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 95710 |||||| | ||| | |||||||| | ||||| ||||| ||||| || || ||| Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3 Query 95711 GA 95712 || Sbjct 2 GA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351174514777709