Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_022067.1
Length=109960
Score E
Sequences producing significant alignments: (Bits) Value
seq69458 143 2e-29
seq58751 118 7e-22
seq101272 102 6e-17
seq89170 98.7 7e-16
seq111358 89.7 4e-13
>seq69458
Length=1299
Score = 143 bits (158), Expect = 2e-29
Identities = 205/288 (71%), Gaps = 3/288 (1%)
Strand=Plus/Minus
Query 95567 GGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGATC 95626
|||||||| | | |||| ||| || | ||||| |||||| || || |||||| |
Sbjct 1297 GGCAGGAACAGCGCGTCGCCCTGACCGACGAGCTTCTCGGCCCCCGGCTGGTCCAGCACG 1238
Query 95627 ACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTG 95686
|||||| || | ||| || || ||||||| |||| || |||||||||| |||
Sbjct 1237 ACCCGGGAGTCCGCGAGCGAACTCGTCGCGAACGCCAGCCGCGAGGGCACGTTGGCCTTG 1178
Query 95687 ATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCG 95746
|| || || || || || || |||||||| ||||| ||||| || || || || ||||||
Sbjct 1177 ATGAGCCCCGTCACGACGTCGACGGAGGGGCGCTGGGTCGCGAGCACCAGGTGGATGCCG 1118
Query 95747 GCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCG 95806
|| || || || ||||| |||||| ||| ||||||||| || | | ||
Sbjct 1117 GCGGCCCGGGCGAGCTGGGTGATGCGCTGGATGGAGGCCTCGACGTCGCGCGGGG---CG 1061
Query 95807 CCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGGGG 95854
||||||| ||||| || ||||||||||| || |||| | ||| |||
Sbjct 1060 ACCATCATCAGGTCGGCGAGCTCGTCGACGACCACCAGCAGGTACGGG 1013
Score = 86.0 bits (94), Expect = 4e-12
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 95981 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 96040
||||| ||||| || | ||| ||||| ||||| ||| ||||| | || | |
Sbjct 826 AGGTGCGGGATGCCCTCGTAGATCGTGAGCTCCACGCGCTTGGGGTCCACCAGCACCATG 767
Query 96041 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 96100
|||| || || |||| || ||| || || | ||||||||| | ||||||
Sbjct 766 CGGACCTCGTCGGGGGTGGCGCGCATGAGGATCGAGGTGATCATCGAGTTCACGAAGCTC 707
Query 96101 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTTC 96157
||||||||||| ||||| || || || || |||||||||||||| || || ||||||
Sbjct 706 GACTTGCCCGAGCCGGTCGCCCCGGCGACGAGCAGGTGGGGCATCTTCGCGAGGTTC 650
>seq58751
Length=1734
Score = 118 bits (130), Expect = 7e-22
Identities = 201/286 (70%), Gaps = 9/286 (3%)
Strand=Plus/Plus
Query 95565 CGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGA 95624
|||||| | | | | ||| ||| | |||| ||||||||||| || |||| ||||||
Sbjct 854 CGGGCATGTAGAGCATGTCGCCCTTGCCCAGCAGCTGCTCGGCCCCCTGCTCGCCCAGGA 913
Query 95625 TCACCCGGCTATCGGTGAGTGATGCTGTGGCGAA-CGAGAGCCTAGACGGCACGTTGGAT 95683
| || |||| | || || || | ||| ||||| | | ||||| ||||
Sbjct 914 TGGTGCGCGAATCGATCT-TGCTGGTGACGTGAAACGAGATGCGCGTCGGCAGATTGGCC 972
Query 95684 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 95743
||||| | ||| |||| || || || || |||||||||||||||| || ||| || |||
Sbjct 973 TTGATGACGCCGGTGATGACGTCGACCGACGGCCGCTGCGTCGCCATGATGAGGTGGATG 1032
Query 95744 CCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAG 95803
|| || ||||||||||| || || | || || | |||||| || ||||
Sbjct 1033 CCCGCCGCGCGCGCCTTTTGCGCCAGCCGCTGGATCAGGAACTCGACCTC---CTTG--C 1087
Query 95804 CCGCC--CATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGAT 95847
||||| |||||| ||||| |||||||||||||| | ||||||||
Sbjct 1088 CCGCCGTCATCATCAGGTCGGCCAGCTCGTCGACGATCACCACGAT 1133
Score = 98.7 bits (108), Expect = 7e-16
Identities = 182/266 (68%), Gaps = 6/266 (2%)
Strand=Plus/Plus
Query 95893 CATCTGCCGGTACCGGTCATCCATCT---CCACGGTGAGCCACCGCAGCGTCTTAACCGC 95949
|||||| || || ||||| ||||||| |||| | ||| ||||| |||||
Sbjct 1293 CATCTGGCGATAGCGGTCCTCCATCTGCTCCACCGC---CCATTTCAGCGCGCGCACCGC 1349
Query 95950 CTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAG 96009
|| | | || |||||||| || || || ||||||||||| ||| ||| | | |
Sbjct 1350 CTTGGCCGGGTCGGTGACGACGGGGGACAGCAGGTGGGGGATGTCGTCGTACATGCTCAA 1409
Query 96010 TTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAG 96069
|| | |||||| |||||||||||||| | | | | | || || | ||||||||
Sbjct 1410 CTCGAGCATCTTGGGGTCGATCATGATCATCCGGCACTGTTCGGGCGTCAGCCGGTAGAG 1469
Query 96070 CATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCAC 96129
|| || | | ||| |||||| | ||||||||||| ||||||| ||| || ||
Sbjct 1470 CAGCGACAGGATCATGCAGTTGAGCCCGACCGACTTGCCCGAGCCGGTGGTGCCCGCAAC 1529
Query 96130 CAGCAGGTGGGGCATTTTGGCCAGGT 96155
||||| ||| ||||| ||| ||||
Sbjct 1530 CAGCAAGTGCGGCATGGGGGCGAGGT 1555
>seq101272
Length=699
Score = 102 bits (112), Expect = 6e-17
Identities = 226/338 (67%), Gaps = 6/338 (2%)
Strand=Plus/Minus
Query 98040 GAGGTAGTACGGGCGATCCAGCAGGATCGGGTCAACCTCGCCGGCCGGCACGAACTCCAC 98099
|||| |||| ||| || | | ||| |||||| | || || |||||||||||| ||
Sbjct 536 GAGGAAGTAGCTGCGGTCGAACCGGACCGGGTCGATCTGCTCGCTCGGCACGAACTCGAC 477
Query 98100 AACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCAGTAG 98159
|| || ||| | | | ||| |||||| | | ||| || |||| || |
Sbjct 476 GACCTCGATCTCGCGGCTCCGCTCGACGGGCAGGGCCTTGAGGTCGTCGCTGGTGAGGAC 417
Query 98160 GGCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCCCC 98219
| |||| ||| | ||||| || ||||| | | ||||| || |||| || |||
Sbjct 416 GACGGTGGTGCCGCCCTCCTCGTACGCCTTGTCGATGTCGGCGTAGTCGACCGTCTTCCC 357
Query 98220 ACACGTCTCACAGACCTTGTG---GTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCCAG 98276
||| ||| || |||| | |||||| || |||||||||||| | ||||| || |
Sbjct 356 GCACACCTCGCA---CTTGCGCTCGTAGCGGATGCGCCCGCCGTCCGCGCCGTGCACCTG 300
Query 98277 ATGGCCCTTCAGGTCGTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACCAA 98336
|| ||| |||||| |||| ||||| ||| | | ||||| ||||| ||||
Sbjct 299 GTGCAGGCTCACGTCGTGGTCCTGCGTGGCGCTGTAGAGCCGGACCGGGACGTTCACCAG 240
Query 98337 CCCGAAGTTGACCGCGCCTGTCCAAACCGCTCTCATGC 98374
||||| ||| ||| || ||||| | |||||||||||
Sbjct 239 GCCGAACGTGATCGCCCCGGTCCAGATCGCTCTCATGC 202
>seq89170
Length=865
Score = 98.7 bits (108), Expect = 7e-16
Identities = 208/308 (68%), Gaps = 12/308 (4%)
Strand=Plus/Minus
Query 98041 AGGTAGTACGGGCGATCCAGCAGGATCGGGTCAACCTCGCCGGCCGGCACGAACTCCACA 98100
|||||||| ||| ||||| |||||| ||| | || | |||| ||||||||||| ||
Sbjct 331 AGGTAGTAGCTGCGGTCCAGGCGGATCGTGTCGATCTGGTCGGCGGGCACGAACTCGACC 272
Query 98101 ACGTCAATCACCTTGTTGGTTTCGCTGGGCAGCTCTGCCAAGTCCTCATTGGTCAGTAGG 98160
||||| ||| | | | ||| |||||| || |||||| ||||| |
Sbjct 271 ACGTCGATCTCGCGGCTCCGCTCGACCGGCAGCGACTTCAGGTCCTCCGGCGTCAGCACC 212
Query 98161 GCGGTTTGCCCGTCGACCTCGAACACCTTGCCCAGATCGGCCGTGTGGACCTGCTCC--- 98217
|||| || || || | ||| | ||||| | ||| | || |||| || | |
Sbjct 211 ACGGTCTGGTCGCCGGCGTCGTAGGCCTTGTC--GAT-GTCC---TGGAACTCCACGACC 158
Query 98218 ---CCACACGTCTCACAGACCTTGTGGTAGCGAATCCGCCCGCCGTCCTGGACGTGCGCC 98274
|| || |||| ||| |||||||| || || |||||||| | |||| ||
Sbjct 157 CGGCCGCAGATCTCGCAGCGGCGCTGGTAGCGGATGCGGCCGCCGTCGGCGTTGTGCACC 98
Query 98275 AGATGGCCCTTCAGGTCGTGTTCCTCGGTGGCCGCGTACATCTTCACCGGCACGTTGACC 98334
| || | |||||||| |||||||| |||||||||| |||||| ||||||||||||
Sbjct 97 TGGTGCAGCGGGAGGTCGTGGTCCTCGGTCGCCGCGTACAGCTTCACGGGCACGTTGACC 38
Query 98335 AACCCGAA 98342
| ||||||
Sbjct 37 AGCCCGAA 30
>seq111358
Length=586
Score = 89.7 bits (98), Expect = 4e-13
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 95531 GCGCCCTGTATCCGGATGGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTCACCCATT 95590
|||||||| || ||||| || | || |||| |||||||| | |||||| |||
Sbjct 182 GCGCCCTGGATGCGGATCGCCTTGCTGGCGCCCATCGGCAGGAACAGCCCGTCGCCCTGG 123
Query 95591 CCCATGAGCTGCTCGGCTCCACCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCT 95650
|| | |||| || || || ||| |||||||||||||||||| |||||| || |
Sbjct 122 CCGAGCAGCTTGTCCGCGCCGACCTGGTCCAGGATCACCCGGCTGTCGGTGGAGGACGAC 63
Query 95651 GTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACG 95710
|||||| | ||| | |||||||| | ||||| ||||| ||||| || || |||
Sbjct 62 ACGGCGAAGGCGAGGCGGCTGGGCACGTTCGCCTTGATCAGGCCGGTGACCACGTCGACG 3
Query 95711 GA 95712
||
Sbjct 2 GA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351174514777709
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |