Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022068.1 Length=58043 Score E Sequences producing significant alignments: (Bits) Value seq81249 150 7e-32 >seq81249 Length=1001 Score = 150 bits (166), Expect = 7e-32 Identities = 118/141 (84%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 42048 CAGTGGGCGGCCGAGTGCCTGCGCGTGCTGAAACCGGGCGGGCACCTGCTCGCGTTCGGC 42107 |||||||| ||||||||||| ||| | || ||||| |||||||| || ||||| |||||| Sbjct 141 CAGTGGGCCGCCGAGTGCCTCCGCATCCTCAAACCCGGCGGGCAGCTCCTCGCCTTCGGC 82 Query 42108 GGTTCGCGCACCTGGCACCGGCTAGCGGCGGCGATCGAGGACGCCGGGTTCGAGATCCGC 42167 ||| | ||||||| ||||| || || || | |||||||||||||| |||||||||||| Sbjct 81 GGTACTCGCACCTTCCACCGCCTCGCTGCCGGAATCGAGGACGCCGGATTCGAGATCCGC 22 Query 42168 GACTCCATCGCCTGGCTGTAC 42188 ||||| ||||| ||||| ||| Sbjct 21 GACTCGATCGCGTGGCTCTAC 1 Score = 102 bits (112), Expect = 3e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41712 ACCCTCTACCACGGGGACTGCCTCGACGTGCTCGCCGAGCTGCCCGATCGCAGCGTCGAC 41771 || ||||||| ||| |||||||||||||| ||| |||||||||| ||||||| || Sbjct 291 ACGCTCTACCTCGGCGACTGCCTCGACGTCCTCCGGAAGCTGCCCGACGGCAGCGTGCAC 232 Query 41772 GCCGTGGTTTGCGACCCGCCCTACGGGCTCGAGTTCATGGGCAAGGAGTGGGATCG 41827 ||||| || ||| |||||||||| ||||| ||||||||| | | |||||||| Sbjct 231 GCCGTCGTCACCGATCCGCCCTACGCCCTCGACTTCATGGGCCACGGCTGGGATCG 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185321544462090