Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq103386 120 5e-22 seq83720 104 4e-17 >seq103386 Length=673 Score = 120 bits (132), Expect = 5e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 35580 GTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACG 35639 || ||||| ||||||||| || || || || ||||| | || ||||||||||||||| Sbjct 482 GTCGTGTTCGAGAACTCCAGCGTGACGTGTCCCTCCCAGCCCGGCTCCAGCGGCGTCACG 541 Query 35640 TTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTG 35699 ||||||||||| || || ||||||||||| || || | || | ||||| |||| | Sbjct 542 TTGACGATGATCCCGCACCGCGCGTAGGTCGATTTGCCGAGGCAAATGACGAGCACGTCG 601 Query 35700 CGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAA 35740 || || | ||||| || |||||||| | |||||| ||||| Sbjct 602 CGAGGCACCCGGAAATACTCGACCGTCCTTGCCAGCGCGAA 642 >seq83720 Length=955 Score = 104 bits (114), Expect = 4e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 |||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||| Sbjct 545 GCCGGTTTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGCGGGTTCGATT 604 Query 120288 CCTGATGCCGGCACCAT 120304 |||| |||||||||| Sbjct 605 CCTGCAACCGGCACCAT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 824537632507560