Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11270 181 2e-39 seq702 123 4e-22 seq35533 118 2e-20 seq99200 114 2e-19 seq66480 114 2e-19 seq3739 100 4e-15 seq57685 93.3 7e-13 seq36801 89.7 8e-12 seq36386 87.8 3e-11 seq10100 87.8 3e-11 seq105869 86.0 1e-10 seq72010 86.0 1e-10 >seq11270 Length=18388 Score = 181 bits (200), Expect = 2e-39 Identities = 180/231 (78%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | |||||||||||||||||||| | |||||||| ||||| ||||||||| Sbjct 5833 GCCTCCGAAACTTGGACCTCCTTCATGAACCTTCCGGCCAGATTCTCCAAAACGATGCCG 5892 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||| ||||| ||| ||||| | |||| ||||| | || Sbjct 5893 TCGGAGGCGGCGAAGAAGGCGAGCACGTGAGTGACGAAGTGCCTCTCGCCGTCGGTTAGG 5952 Query 796270 GAGACCCAGTGGACCGT--GTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 ||||||| ||| |||| || ||| ||||||||||| |||||||| || |||| Sbjct 5953 TTTTCCCAGTG--ACGTAAGTCGCCGGAGAGATCGACCTCCTCTGCGGTCCAGAACGAGG 6010 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||||| |||||||||||||| ||| |||| | || ||||||| Sbjct 6011 CCTCGGCCTTCTTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACA 6061 Score = 179 bits (198), Expect = 6e-39 Identities = 236/326 (72%), Gaps = 7/326 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 |||||||| || |||||| |||||| ||| | |||||||| | |||||||| Sbjct 5509 CCTTCGTCTCGCGAGATCAACTCGTTGGAGAAGGTTAACCCGGGCATTAACCCGCGCTTT 5568 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || |||||||| || || ||||| || || ||||| || ||||| |||||| ||| || Sbjct 5569 TTTAGCCAAAATATCGCGCAGAAGCTACCGGAGAAGAAAATGCCTTCGACGCAGGCGAAA 5628 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| ||||| |||||| || | || ||| || ||||||| || |||||| Sbjct 5629 GCGATGAGCCTCTCGGCGAACGATTCTCCGCCGTC------GATCCACCGCAGGGCCCAC 5682 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| ||| ||| | || || || || || ||| | || || ||| ||||||| Sbjct 5683 TCGGCCTTCTTCGCCACGCAAGGAACGGTCTCCATCGCGTGGAACAGCCGGTTCTTCTCG 5742 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 ||| |||||||| ||||| |||| | ||| ||| | || |||||||| || ||| Sbjct 5743 GCCGAGTCCTTGATATAGGTCTCGAGCAAGAGACTGTACATTTCAGAGTGGATATTCTCG 5802 Query 794641 ATGGCGATCTGGAAGCCATA-AAAGC 794665 || || |||||||||||||| ||||| Sbjct 5803 ATCGCAATCTGGAAGCCATAGAAAGC 5828 >seq702 Length=104363 Score = 123 bits (136), Expect = 4e-22 Identities = 171/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| ||||||||||| ||||| |||||||||||| | || || || || ||| || Sbjct 75935 ACTTGGTCACGGCCTTGGTCCCCTCAGAGACGGCGTGCTTAGCGAGCTCACCAGGCAAGA 75994 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGC 1485591 || || || |||||||||||||| || | | ||| || | || |||||| ||| Sbjct 75995 CCAAACGGACCGCGGTCTGGATCTCCCGAGAGGTGATGGT-TGGCTTCTTGTTGTAGCGA 76053 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| || |||||| ||| |||| || ||||||| || ||||||| Sbjct 76054 GCCAATCGCGAGGCCTCCTGAGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCATG 76113 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||| | |||| ||||||| || | ||| ||||| || ||||| | ||||||| Sbjct 76114 ATCCCCATGGCTTTGCTGGAGATCCCGATGTCCGGGTGAACTTGCTTCAACACCTTG 76170 >seq35533 Length=2598 Score = 118 bits (130), Expect = 2e-20 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC--CG 793986 || |||||||||||||| | |||||||| ||||| | ||| || | || Sbjct 2243 AAGAAGTTGGTCTTGCCATTCAGCGAGATGTTGTCCATGAAATCGAATGGACATGTAACG 2302 Query 793987 TCAGGTAGTGCTTCTCGCACCCGAG--CGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 | ||||||||| | ||||| ||||| || |||||||| ||||||||||| || Sbjct 2303 TT--GTAGTGCTTTGTGAGACCGAGGGCGACG--AGAAGGCGGTCTGCGACGAATTCGAT 2358 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 |||||||||||| || | |||||||||||||| || || |||||| | || ||| Sbjct 2359 GTACTGGCACATAAGTGTGGCGTTCATGCCGAGTAGGGCACAGGGCAGAGCATCAGTGAG 2418 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||||||| |||||| |||||||||| ||||||| Sbjct 2419 GAACTCTTGCTCGATGGCGACGGCCTCTGTGATGAT 2454 >seq99200 Length=725 Score = 114 bits (126), Expect = 2e-19 Identities = 223/327 (68%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||| || ||| ||||| |||||| || || || |||||||| || | ||| Sbjct 234 ACCTTCATCACGAGAGATCAGCTCGTTGGAGAATGTCAGACCAGGCATGAGACCTCTCTT 293 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| || |||| |||| || ||||| ||||||||||| |||||||| || Sbjct 294 CTTGAGCCAGAAAATGGAGGCGAAAGACCCGGAGAAGAAGATGCCCTCAACGGCGGCGAA 353 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | || || || | ||| ||| || | || | | | |||||| ||| |||||| Sbjct 354 TGCCACCAGACGTTGGGCGAAACTG--CTTTCCTTATCAG-AGATCCATCTCAACGCCCA 410 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 ||| ||||| || | | | || | |||||||| || ||||||| | |||| Sbjct 411 CTCAGCCTTCTTGCGGATGCATGGAATAGTGTCGATAGCATCGAAGAGGTACTGTTTCTG 470 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || || || || | || || ||||| | ||| | || |||||||| || || Sbjct 471 CTTTGGCTCTTTCACAAATGTATCAATGAGCAAGCTGTACATTTCGGAGTGGATATTCTC 530 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCA 794666 || ||||||||| ||||||||||| Sbjct 531 CATCATGATCTGGAAACCATAAAAGCA 557 >seq66480 Length=604 Score = 114 bits (126), Expect = 2e-19 Identities = 205/293 (70%), Gaps = 10/293 (3%) Strand=Plus/Minus Query 118574 GCGAATGTCGCCCAGGAGGACGCGCGTGACCGTGTTTGACCCGTTCTTGCGCACGCCGCG 118633 ||| | || ||| ||| | ||| |||||| || || || ||| |||||| |||||||| Sbjct 523 GCGGAGGTGGCCGCGGACGGCGCTCGTGACGGTCTTGGAGCCGGGCTTGCGGACGCCGCG 464 Query 118634 CATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGCCGCGCGCGCCCGTGAC 118693 |||| || ||| | ||| || ||||| |||||| ||||||||| | || | | Sbjct 463 CATGGTCATGCAGAGGTGCTCGCACTCGACGACGACGATGACGCCGCG-GGGCTTGAGGT 405 Query 118694 CTCGCT-GATGCTCTCGGCGATCTGGCGCGTGA-GCGCCTCCTGCACCTGGAAGCGGTCC 118751 |||| || | |||||||||||| ||| | ||| |||||| ||||| ||| | Sbjct 404 AGCGCTCGAGGGCGTCGGCGATCTGGGTCGTCATGCG-CTCCTGGACCTGCGGGCGCTTG 346 Query 118752 GAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCC--CG----CG 118805 | | | |||||||| ||| | | |||| ||||||| |||| | ||| || | Sbjct 345 GCGTAGACGTCGACGAGGCGGGCCAGCTTGGACAGGCCGGTGATGCGGCCGTCGAGGTTG 286 Query 118806 GGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGCA 118858 ||||||||||| | ||| || |||| | || |||| || ||||||||||| Sbjct 285 GGCAGGTAGCCGATGTGGGCGACGCCGGTGAACGGCACGAGGTGGTGCTCGCA 233 >seq3739 Length=49118 Score = 100 bits (110), Expect = 4e-15 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || |||||||| ||||| || ||||||||| | || || || || ||| || Sbjct 11923 ACTTAGTCACCGCCTTGGTCCCCTCAGACACGGCGTGCTTAGCGAGCTCACCAGGCAAGA 11982 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTGCGC 1485591 || ||| || |||||||||||||| || | | || || | || |||||| ||| Sbjct 11983 CCAAGCGAACCGCGGTCTGGATCTCCCGAGAGGTAATGGT-TGGCTTCTTGTTGTAGCGA 12041 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| ||| ||||| ||| |||| || ||||||| || ||||||| Sbjct 12042 GCCAATCGGGAAGCCTCCTGAGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCATG 12101 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||| | ||| ||||||| || | ||| ||||| || ||||| | |||||| Sbjct 12102 ATCCCCATGGCCTTGCTGGAGATACCGATGTCTGGGTGAACTTGCTTCAAGACCTTG 12158 >seq57685 Length=1792 Score = 93.3 bits (102), Expect = 7e-13 Identities = 176/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| || || || | ||| ||||| || ||||| || || || || ||||| Sbjct 1426 TGGTCGACATAACGAGCAGTATTGTTGAAGACACGAAGCATTGGTACCAGACCATTGGAT 1485 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 ||| |||||||| | | ||| | || | || || | ||| || || ||| Sbjct 1486 GTGCCATTGGTGCCGCCAATGTACGAACCAGTCGCACGGATGCGGTGAACGTTGAACCCG 1545 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 |||||||| || ||| ||||| | ||||| | || || || |||||||| |||||| Sbjct 1546 ATGCCGCCAGCATTCTTCGAGATCATTGCGCAGGTCTTGAGTGTATCGTAGATACCCTCG 1605 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 || ||| |||| | ||| | || ||||| || | || ||| | || || Sbjct 1606 ATGCTGTCCTCCTTGACGTCGATGAGGAAGCAGGAGGCCAGCTGTGGGTTGGGAGTACCA 1665 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 ||| ||||||| || |||| Sbjct 1666 GCACTGAAGAGTGTCGGCG 1684 >seq36801 Length=2667 Score = 89.7 bits (98), Expect = 8e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 122738 GCCGAGAACCTCATGATCGTCGACCTGGTGCGCAACGACCTGAGCGTGTGCTGCGCGCCC 122797 ||||||||| ||||||||||||||||| |||||||||||||| | | ||||||||| Sbjct 1452 GCCGAGAACGTCATGATCGTCGACCTGCTGCGCAACGACCTGTCCCGGGTCTGCGCGCCG 1511 Query 122798 GGCAGCGTCGTCGTACC 122814 |||||||||| ||| || Sbjct 1512 GGCAGCGTCGCCGTGCC 1528 >seq36386 Length=2490 Score = 87.8 bits (96), Expect = 3e-11 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| |||||||||||||| || || ||||||||| ||||||| || ||| ||| Sbjct 874 GTACTTGGTCACGGCCTTGGTACCTTCCGACACGGCGTGCTTGGCCAGCTCACCGGGCAG 933 Query 1485531 GATCAGGCGCACGGCGGTCTGGA--TCTCGCG 1485560 |||||| || || | || |||| ||||||| Sbjct 934 GATCAGACGAACTGATGTTTGGATTTCTCGCG 965 >seq10100 Length=20951 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| || || |||||||||||| |||| || |||||| | | || Sbjct 18538 ACTTGGTAACCGCCTTGGTTCCTTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGA 18597 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 ||| ||||| || |||||||| ||||| Sbjct 18598 CCAGCCGCACCGCCGTCTGGATTTCGCG 18625 >seq105869 Length=645 Score = 86.0 bits (94), Expect = 1e-10 Identities = 92/120 (77%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 794549 TGTCGATGGCGCGAAAGAGGT--GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 |||| |||||| ||||||| | | || ||| || || ||| ||| |||||||| Sbjct 185 TGTCAATGGCGTTGAAGAGGTATGAGCGTTGTCGT--GGCTCGCTGATGTATGTGTCGAT 242 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||| ||||| ||||| |||||||| || || || ||||||||||||||| ||||| Sbjct 243 GAGGAGGGAGTATGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCATAGAAGCA 302 >seq72010 Length=1221 Score = 86.0 bits (94), Expect = 1e-10 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 |||||||| ||||| ||||| ||||| ||||| |||| ||||||||||| ||||| | Sbjct 1005 TCCTTGACATAGGTATCGATCAGGAGAGAGTACATCTCAGAGTGGATGTTCTCGATCATG 946 Query 794647 ATCTGGAAGCCATAAAAGCA 794666 |||||||| ||||| ||||| Sbjct 945 ATCTGGAAACCATAGAAGCA 926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7902035928770571