Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_022975.1 Length=52390 Score E Sequences producing significant alignments: (Bits) Value seq81249 140 1e-28 >seq81249 Length=1001 Score = 140 bits (154), Expect = 1e-28 Identities = 205/283 (72%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 41680 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAAGCCCGCGTCCTCGATGGCCACGGTCAG 41739 ||||||||||||||||||||||||||||||||| || ||||||||||| | | | || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCGAG 60 Query 41740 CCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGCCCACCCGGCTTGAGGACCCG 41799 ||||| ||||||| | |||||||||||||| || ||||| || || ||||||| || Sbjct 61 GCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGATGCG 120 Query 41800 CAGGCATT--GC-TCCCACATCTCG-AC-----GTCGAA---GGCGATGCCCGAGCCGTC 41847 ||||| | || ||||| |||| || | ||| | || | ||| || Sbjct 121 GAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTCGCCGGGGGTGTAGCGATC 180 Query 41848 CCACTTCTTGCCCATGAATCCCAGTTCGTAGGGCGGGTCGGTGACGATGGAGTCGACACT 41907 ||| | ||||||||| | || |||||||||| |||||||||| || || || || Sbjct 181 CCAGCCGTGGCCCATGAAGTCGAGGGCGTAGGGCGGATCGGTGACGACGGCGTGCACGCT 240 Query 41908 GGCGTCTTCTAG-TTCGGTGAGGATGTCTCGGCAGTCCCCGAG 41949 | |||| || ||| | ||||| ||| ||||||| ||||| Sbjct 241 GCCGTCGGGCAGCTTCCG-GAGGACGTCGAGGCAGTCGCCGAG 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167260641249536