Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq65589 87.8 5e-13 seq65588 87.8 5e-13 seq69459 80.6 7e-11 >seq65589 Length=857 Score = 87.8 bits (96), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGA---AGAACACGACGCGG 23595 ||||||||||| |||| |||| | | || | ||| || ||| |||||| | Sbjct 316 CCCTTGCGCAGGTACTGCTCGGCCACCCGGGACAGGTTGTCGTTGTAGATCACGACCGAG 257 Query 23596 TGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTG 23655 ||||| |||||||| |||||||||||||||| |||||||||||| | ||||| || Sbjct 256 TGCCACTCGGTCTTCTCCTTGCGCTCGCCGGAGGCCTTGTCCTTCCACGACTCCGAGGTC 197 Query 23656 GCCAGGCTGATGTTGCAGACGGCATCGCC 23684 || | | | ||||||||| | |||||| Sbjct 196 GCGATCCGCAGGTTGCAGACCGGATCGCC 168 >seq65588 Length=573 Score = 87.8 bits (96), Expect = 5e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 23582 AGAACACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCC 23641 ||| |||||| |||||| |||||||| |||||||||||||||| ||||||||||| Sbjct 549 AGATCACGACCGAGTGCCACTCGGTCTTCTCCTTGCGCTCGCCGGAGGCCTTGTCCTTCC 490 Query 23642 AGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCC 23684 ||| || || || ||||| | | ||||||||| | ||||| Sbjct 489 AGGACTCGGAGGTCGCCAGCCGCAGGTTGCAGACCGGGTCGCC 447 >seq69459 Length=1295 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 21063 TGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCC 21122 ||||| ||||||| ||||||||| ||||||| || ||| | ||| || ||||||||| Sbjct 8 TGGCGCACCCGACACGATTCGAACGTGTGACCTTTGCCTTCGGAGGGCAACGCTCTATCC 67 Query 21123 AGCTGAGCTACGGG 21136 |||||||||||||| Sbjct 68 AGCTGAGCTACGGG 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139062245397068