Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq10846 116 3e-21 seq16751 95.1 1e-14 seq13269 91.5 1e-13 seq58168 87.8 1e-12 seq1750 86.0 5e-12 seq50277 82.4 6e-11 >seq10846 Length=19378 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || || || || ||||||||||| | || ||| ||| Sbjct 11503 AATGCAAATTTTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 11444 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||| | | | || ||| ||||| || ||||| || | || ||| | Sbjct 11443 T-GATACTATTGATAATGTCAAAGCTAAGATCCAAGACAAAGAGGGTATCCCACCGGACC 11385 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || |||| ||| || || ||| |||| || | | ||| | || || |||| Sbjct 11384 AACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGAACCTTAGCTGATTACA 11325 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||||| || ||||| ||||| || |||||||||| |||| Sbjct 11324 ACATTCAAAAGGAGTCGACCCTGCACTTGGTGCTGCGATTGCGAGGAGGAA 11274 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || || || || || || || ||||| ||| | || || | Sbjct 11047 AATGCAGATTTTCGTTAAGACCTTGACTGGTAAGACCATAACCTTGGAGGTTGAAAGTTC 10988 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||||| || || || || | || ||||| Sbjct 10987 TGATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCAGATCA 10928 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || |||||||| || || | | || |||| || ||||| Sbjct 10927 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAA 10868 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 10867 TATCCAAAAGGAGTCTACTCTGCAC 10843 >seq16751 Length=10463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| || || || || ||||| || |||||||| | || ||| | Sbjct 6064 AATGCAGATTTTCGTTAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGTTC 6005 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | |||||| ||||||| || || || || | ||| || || Sbjct 6004 TGATACAATTGATAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCA 5945 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || |||||||| || || | | || |||| || ||||| Sbjct 5944 GCAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAA 5885 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 5884 TATCCAAAAGGAGTCTACTCTGCAC 5860 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||||||||| || || || || |||||||| ||||| | || ||| | Sbjct 6520 AATGCAAATTTTTGTTAAGACCTTGACTGGCAAAACAATTACTTTGGAGGTTGAGAGTTC 6461 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | || ||| ||||| || || || || | || || || Sbjct 6460 AGATACTATCGATAATGTTAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCA 6401 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| || |||| ||| || || ||| |||| || | | || | || || ||||| Sbjct 6400 ACAGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAA 6341 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||| || ||||| ||||| || | ||||| || |||| Sbjct 6340 TATTCAAAAGGAGTCAACCCTGCACTTGGTGCTGCGTTTGCGTGGTGGAA 6291 >seq13269 Length=14915 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||||||||| ||| | || || || ||||| ||| | || |||| ||| Sbjct 14121 AATGCAGATTTTTGTCAAGACTCTGACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTC 14180 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | || ||| ||||||| ||||| ||||| | || ||||| Sbjct 14181 T-GATACCATAGATAATGTTAAAGCAAAGATTCAAGATAAGGAAGGGATTCCTCCGGATC 14239 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || ||||| || ||||| | | || |||| || |||| Sbjct 14240 AGCAGAGGCTCATCTTTGCTGGAAAACAACTTGAGGATGGCCGCACTCTGGCTGATTACA 14299 Query 107734 ACATTCAAAAGGAGTCTAC 107752 | ||||| ||||| || || Sbjct 14300 ATATTCAGAAGGAATCAAC 14318 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || || || |||||||| | ||| ||| | Sbjct 13438 ATGCAGATTTTTGTCAAGACACTCACCGGAAAGACCATTACTCTTGAAGTTGAGAGTTCT 13497 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||| || |||||||| | ||| |||||| Sbjct 13498 GATACAATAGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCAG 13557 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| || || || ||||| ||||| | | ||| |||| || |||||| Sbjct 13558 CAGAGGCTGATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAAC 13617 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| ||||| ||||| Sbjct 13618 ATTCAGAAGGAATCTAC 13634 >seq58168 Length=1766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 || ||||| || ||||| |||||| | |||||||| ||||| ||| | || |||| || Sbjct 297 AAGATGCAGATCTTTGTGAAAACTCTGACAGGCAAGACCATCACCTTGGAGGTGGAGAGC 356 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | ||| || ||| | | || || |||||| ||||| ||||| | || ||| Sbjct 357 TC-CGACACCATCGACAACGTGAAGGCCAAGATTTAGGATAAGGAAGGGATTCCGCCGGA 415 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||||| || || | || || ||||| ||||||||| || | || || || Sbjct 416 CCAGCAGAGGCTCATCTTCGCCGGGAAACAATTGGAGGACGGTCGTACCCTCGCCGATTA 475 Query 107732 CAACATTCAAAAGGAGTCTACG 107753 ||||||||| || ||||| ||| Sbjct 476 CAACATTCAGAAAGAGTCAACG 497 >seq1750 Length=74028 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| ||||| || | || || || |||||||| | ||| ||| | | Sbjct 61782 ATGCAGATTTTCGTCAAGACACTCACTGGGAAGACCATTACTCTTGAAGTTGAGAGTTCC 61841 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || || ||| || ||||||||| | ||| |||||| Sbjct 61842 GATACCATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 61901 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || || || || ||||| | | ||| |||| || || ||| Sbjct 61902 CAGAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGCCGAACTCTGGCCGATTATAAC 61961 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| ||||||||||| Sbjct 61962 ATTCAGAAGGAGTCTAC 61978 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || ||||| || ||||| |||| ||| ||| Sbjct 62237 AATGCAAATCTTTGTAAAGACCCTTACTGGCAAGACTATTACTCTCGAGGTTGAGAGCTC 62296 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | | || ||| ||| ||| ||||| ||||| | || || | Sbjct 62297 T-GACACAATTGACAACGTCAAAGCAAAAATTCAGGATAAGGAAGGTATTCCACCAGACC 62355 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || || | ||| || |||||||||||||| | || || |||| ||||| | Sbjct 62356 AACAGAGGCTGATATTTGCTGGAAAACAGCTGGAGGAGGGCAGGACTTTGGCTGACTATA 62415 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| || || |||||||| Sbjct 62416 ACATCCAGAAAGAGTCTAC 62434 >seq50277 Length=901 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 107567 TGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATACTGTCGG 107626 ||| || || || ||||| || |||||||| | || ||| | ||||| | | Sbjct 901 TGTTAAGACCTTGACAGGGAAGACCATTACTTTGGAGGTTGAGAGTTCTGATACAATTGA 842 Query 107627 CCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTAT 107686 | |||||| ||||||| || || || || | ||| || |||||||| ||||| Sbjct 841 TAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCAGACCAGCAGAGGCTTAT 782 Query 107687 TTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGA 107746 || ||| || |||||||| || || | | || |||| || ||||| || |||||||| Sbjct 781 TTTTGCAGGCAAACAGCTTGAAGATGGAAGGACTCTGGCTGATTACAATATCCAAAAGGA 722 Query 107747 GTCTACGTTGCAC 107759 |||||| ||||| Sbjct 721 GTCTACTCTGCAC 709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398227382324821