Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq124414 105 1e-17 seq3441 100 4e-16 seq16751 96.9 5e-15 seq10846 84.2 3e-11 >seq124414 Length=715 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||| || || || |||| || ||| || Sbjct 513 TGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCCG 454 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||||| || || ||||| || ||||| ||||| | Sbjct 453 ATACTATTGACAATGTGAAAGCGAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAGC 394 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| |||||||| || ||||||||||| || ||| | |||| | | || || |||| Sbjct 393 AAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAATA 334 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || |||| || || Sbjct 333 TCCAGAAAGAGTCTACCCTCCACTTGGT 306 >seq3441 Length=50379 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || ||||| || || || |||| || ||| || Sbjct 15056 TGCAGATCTTTGTGAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTTGAAAGCTCCG 14997 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||||| || || || || || ||||| ||||| | Sbjct 14996 ATACTATTGACAATGTGAAAGCGAAAATCCAGGACAAGGAGGGAATCCCACCAGATCAGC 14937 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| |||||||| || ||||||||||| || ||| | |||| | | || || |||| Sbjct 14936 AAAGGCTCATTTTCGCTGGTAAACAATTGGAAGATGGTCGAACTCTTGCCGACTACAATA 14877 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || |||| || || Sbjct 14876 TCCAGAAAGAGTCCACCCTCCACTTGGT 14849 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| || || ||||| || ||| | || || ||| | | Sbjct 14144 TGCAGATTTTTGTGAAGACATTGACTGGTAAAACCATAACTCTGGAGGTGGAAAGTTCTG 14085 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || |||||| ||| || || ||||| |||||||||||||| || | Sbjct 14084 ATACCATTGACAACGTAAAAGCTAAGATTCAGGACAAAGAGGGCATTCCACCCGACCAGC 14025 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| ||||| || || || ||| | || | |||||||||| | Sbjct 14024 AGAGGCTGATTTTTGCTGGTAAGCAGTTGGAGGATGGGCGGACTCTTGCAGATTATAACA 13965 Query 146212 TACAAAAAGAATCGACT 146228 | ||||| || || ||| Sbjct 13964 TCCAAAAGGAGTCAACT 13948 >seq16751 Length=10463 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || |||||||||||| | || || || | | Sbjct 6518 TGCAAATTTTTGTTAAGACCTTGACTGGCAAAACAATTACTTTGGAGGTTGAGAGTTCAG 6459 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||| ||| ||| || ||| || || || || ||||| || |||| Sbjct 6458 ATACTATCGATAATGTTAAAGCTAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAAC 6399 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || || || || ||| || || ||| | ||||| |||| Sbjct 6398 AGAGGCTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAATA 6339 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 6338 TTCAAAAGGAGTCAAC 6323 >seq10846 Length=19378 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || ||||| || || | || || ||| | Sbjct 11273 TGCAGATTTTCGTGAAGACTTTGACTGGGAAAACCATAACCTTGGAGGTTGAAAGCTCAG 11214 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || || |||||| || ||||| || ||||| || || | Sbjct 11213 ATACTATTGACAATGTGAAGGCAAAGATACAAGACAAGGAAGGTATACCACCAGACCAGC 11154 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || ||||||||||| || || | || ||| || || | ||||||| |||| Sbjct 11153 AAAGGCTTATTTTTGCAGGCAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTACAATA 11094 Query 146212 TACAAAAAGAATCGAC 146227 |||| || || || || Sbjct 11093 TACAGAAGGAGTCTAC 11078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 784853610209880