Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023498.1 Length=62466 Score E Sequences producing significant alignments: (Bits) Value seq37323 333 1e-86 seq117163 217 6e-52 seq78025 145 3e-30 seq78026 138 5e-28 >seq37323 Length=3330 Score = 333 bits (368), Expect = 1e-86 Identities = 544/769 (71%), Gaps = 40/769 (5%) Strand=Plus/Minus Query 56159 TGGCGTGAGCAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGAT 56218 ||||| ||||||| ||| | |||||| |||| ||||| ||||||||| | | | |||| Sbjct 1900 TGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGAC 1841 Query 56219 CACCTTGACCG----GGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAA 56274 | ||||| ||||||||||||||||||||| || || ||||| |||||| Sbjct 1840 GA----GACCGATGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCG 1785 Query 56275 GATCGCCCAGCGGCATATCTCTGCGGCGCAGGGGTAT-TGCCAGGCGCAAGGGCTGCACG 56333 ||||||||||| ||| ||| | ||||||| | || | | || || | || Sbjct 1784 GATCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCG-GCTGTGGATCCAGC 1726 Query 56334 TCCCGCACCGCGACCTCGCGTACCTCGTCGAGGGCACTGTCG-AGTTCGACCGCTACCTC 56392 | || |||||||||| || ||||| || |||||||| | || |||||||||||||| || Sbjct 1725 TGCCCGACCGCGACCTGGCCTACCTGGTGGAGGGCAC-GCCGCAGTTCGACCGCTACATC 1667 Query 56393 GTCGAGCTGCGGTGGGCGCAGCGGTTCGCG-TACTACAACCGCGCCGAGATGATGGACCG 56451 | ||| ||||| ||||||||||| ||||| | || ||||||| |||||||||||||| Sbjct 1666 GCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTG-AACCGCGAGGAGATGATGGACCG 1608 Query 56452 TTTCGCGC---AGGCGTTCCGGCATTGGATCGGCGCCGACGCCCCGATCGACGAGCTGGT 56508 ||| || ||| | | ||| |||| || | || | | |||| Sbjct 1607 CGTCGTGCGCCAGGTCTCCGAGCACC---TCGGTGCGG------CGGTGCAGGAGCG--- 1560 Query 56509 CGTCGAGACGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGA 56568 |||| ||||||| || ||||||| ||||||| |||||| |||| ||||||||| Sbjct 1559 ---CGAGCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCCGTGA 1503 Query 56569 GGTGTGGTTGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCC 56628 || ||| || |||||||||| || ||| | |||| |||| | | |||||||| || Sbjct 1502 CGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACCTCGGCCTGATCCC 1443 Query 56629 CGGCAGCATGGGCACTTGCTCGTATGTCGTGACGGGCAAGGGCAATCCCGA-GGCGCTGC 56687 ||| ||||| || ||| || || ||| ||| ||| | || || |||||| Sbjct 1442 CGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGA-CCGGATGGCGCTCG 1384 Query 56688 ATTCTGCGCCGCACGGCGCCGGTCGCCGGTTCTCGCGCGCCAAGGCCCGAAAGCTGTTCA 56747 | || |||||||||||||||| ||| | | ||||| | ||||| || ||| ||||| Sbjct 1383 ACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGCGGAAGGCGTTCA 1324 Query 56748 CGGTCGACGACCTCGCCGACCGTATGCAGGGCATCGAGTACCGGCACGGCGAGGCGTGGG 56807 || |||| | || ||| ||| ||||||||||| |||| || |||||| | Sbjct 1323 CGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACACCGAGGCCTTCC 1264 Query 56808 TCGATGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCCGACAGCC 56867 | || ||||| || | |||||||||||||| ||| |||||||||||||| | | || Sbjct 1263 TGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCGACGCGGCCGACC 1204 Query 56868 TGGTGA-CGATCG--ACGCCGAGCTGCGCCAGGTGCTCAACGTCAAGGG 56913 |||| | || || || || ||||||||| || ||||||| ||||| Sbjct 1203 TGGTCACCGTGCGGCACACC---CTGCGCCAGCTGGTCAACGTGAAGGG 1158 Score = 105 bits (116), Expect = 3e-18 Identities = 184/267 (69%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 55769 GCCAGCGAGGTTGACGACGAGACGCTCGCGCAGGCACAGCAGATCGCTGATC-TGCCTTT 55827 ||||||| | | || |||| ||||||| |||||| |||| | || || | |||| || Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGCGCAGCGCA-CGTCGACCATGCCCTT 2610 Query 55828 CGTTCATCCGCACGTGGCGCTGATGCCCGACGCGCATTACGGCAAGGGCTCAAGCGTCGG 55887 | | || |||||| |||| ||||||||||||||||| || ||| | | ||||| Sbjct 2609 CATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTCGG 2550 Query 55888 CACGGTGATCCCGACTGAGGGCNNNNNNNNNNNNNNCGCGGTGGGCGTCGATATCGGTTG 55947 | ||||||||||||| ||| ||||||||| || || ||||| || Sbjct 2549 CTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGCTG 2490 Query 55948 CGGCATGATCGCCGCGCGCACCGTGTACACGGCCG--CCGACCTTGAGG---GCCGCCAG 56002 ||| |||||||| | ||||| || || ||| ||||||| |||| || || | Sbjct 2489 CGGGATGATCGCGGTCCGCACGCAGT--TCGACCGGTCCGACCTGGAGGCCCGCGGCGAC 2432 Query 56003 CTCGCCGATCTGCGGGCGTCGATCGAG 56029 || |||| |||||| | ||||||| Sbjct 2431 CTGGCCGGCCTGCGGCAGCAGATCGAG 2405 >seq117163 Length=525 Score = 217 bits (240), Expect = 6e-52 Identities = 354/502 (71%), Gaps = 32/502 (6%) Strand=Plus/Plus Query 56168 CAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGATCACCTTGAC 56227 ||||| |||||||| || || ||||| ||||||||| | | | | || | ||| Sbjct 34 CAGCTGGGCACCCTGGGGTCGGGCAACCACTTCATCGAGGTCTCCGTGGACGAGGAGGAC 93 Query 56228 CGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATCGCCCAGCGG 56287 ||||||||| |||||| ||||| || || |||||||||||| |||||| ||| | Sbjct 94 CGGGTGTGGGCGTTCCTCCACTCGGGGAGCCGCGGCGTCGGCAACCGGATCGCGCAGGCG 153 Query 56288 CATATCTCTGCGGCGCAGGGGTATTGCCAGGCGCAAGGGCTGCA-CG---TCCCGCACCG 56343 || ||| | ||||||| || | || ||| | || | || |||||||||| Sbjct 154 CACATCGAGGTCGCGCAGGCCC--TGAT-GACG-AAGTGGTGGATCGATCTCCCGCACCG 209 Query 56344 CGACCTCGCGTACCTCGTCGAGGGCACTGTCGAGTTCGACCGCTACCTCGTCGAGCTGCG 56403 ||||||||| ||||| || ||||| || | ||||||||||| ||| ||| ||||||||| Sbjct 210 CGACCTCGCCTACCTGGTGGAGGGGACGGCGGAGTTCGACCGGTACATCGCCGAGCTGCG 269 Query 56404 GTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAGATGATGGACCGTTTCGCGCAGGC 56463 ||||||||||||||||||| |||||||| |||||||||||||| ||| Sbjct 270 GTGGGCGCAGCGGTTCGCGCTGGTCAACCGCGAGGAGATGATGGACCGCGTCG------- 322 Query 56464 GTTCCGGCATTGGATCGGCGCCGACGCCCCGATCGACGAGCTGGTCGT------CGAGAC 56517 ||||||| | | | |||| || || ||| |||| ||||| ||| Sbjct 323 --TCCGGCA---GCT---CTCCGA-GCACC--TCGGCGAGGCCGTCGTGGAGCAGGAGCG 371 Query 56518 GATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGGTGTGGTT 56577 |||||||||||| ||||||| ||||||| |||||| |||| |||| | || ||| | Sbjct 372 GATCAACACGCACCACAACTTCACGCAGCAGGAGCGGCACTTCGGCAGGACCGTCTGGGT 431 Query 56578 GACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCGGCAGCAT 56637 | || ||||| |||||| |||| |||||| | | || ||||| ||||| || Sbjct 432 CTCGCGGAAGGGCGCGATCTCGGCGCGCGAGGGCGAGGCCGGGCTGATCCCCGGATCGAT 491 Query 56638 GGGCACTTGCTCGTATGTCGTG 56659 |||||| ||| || || ||| Sbjct 492 GGGCACCGCCTCCTACGTGGTG 513 >seq78025 Length=530 Score = 145 bits (160), Expect = 3e-30 Identities = 199/276 (72%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 56159 TGGCGTGAGCAGCTCGGCACCCTCGGCGGCGGTAACCATTTCATCGAGCTGTGCCTCGAT 56218 ||||| |||||| || | ||||| ||| ||||| ||||||||| | ||||||| Sbjct 257 TGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGGCAACCACTTCATCGAGGTCAGCCTCGAC 316 Query 56219 CACCTTGACCGGGTGTGGCTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGCAACAAGATC 56278 | || |||||||||||||||||||||||||| || ||||| || || ||||||||| || Sbjct 317 GAGCTCGACCGGGTGTGGCTGTTCCTGCACTCGGGCTCGCGCGGGGTGGGCAACAAGCTC 376 Query 56279 GCCCAGCGGCATATCTCTGCGGCGCAGGGGTATTG--CCAGGCGCAAGGGCTGCACGTCC 56336 || ||||| ||| | ||||||| | | || || |||| || | | | | Sbjct 377 GCGACCCGGCACATCAAGGTCGCGCAGGAGCAGTGCACCCGGCG--GTGGATCGCCCTGC 434 Query 56337 CGCACCGCGACCTCGCGTACCTCGTCGAGGGCACTGTCGAGTTCGACCGCTACCTCGTCG 56396 || | | |||||||| |||||||||||||| ||||||| |||||||| | Sbjct 435 CGGATCCGGACCTCGCCTACCTCGTCGAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGG 494 Query 56397 AGCTGCGGTGGGCGCAGCGGTTCGCGTACTACAACC 56432 ||||||||||||||| |||||| | | ||||| Sbjct 495 CCCTGCGGTGGGCGCAGGAGTTCGCCTTCCGCAACC 530 >seq78026 Length=538 Score = 138 bits (152), Expect = 5e-28 Identities = 279/406 (69%), Gaps = 6/406 (1%) Strand=Plus/Plus Query 56511 TCGAGACGATCAACACGCATCACAACTACACGCAGAAGGAGCTGCACGGCGGCCGTGAGG 56570 ||||| ||||||| || ||||||||||| | ||||| |||| |||| | Sbjct 47 TCGAGGAGATCAACTGCCACCACAACTACACCGCGCAGGAGAAGCACTTCGGCAAGACCG 106 Query 56571 TGTGGTTGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCCTGATTCCCG 56630 | ||| | |||||||||| |||||||||||| || || || || ||||| |||| Sbjct 107 TCTGGCTCTCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCG 166 Query 56631 GCAGCATGGGCACTTGCTCGTATGTCGTGACGGGCAAGGGCAATCCCGAGGCGCTGCA-T 56689 | ||||| | ||||| ||||| ||||| |||||| || | |||||||| Sbjct 167 GGTCGATGGGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACA 226 Query 56690 TCTGCGCCGCACGGCGCCGGTCGCCGGTTCTCGCGCGCCAAGGCCCGAAAGCTGTTCACG 56749 | || |||||||| || || ||| || |||||| || ||| || |||| ||||| Sbjct 227 GCAGC-CCGCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACC 285 Query 56750 GTCGACGACCTCGCCGACCGTATGCAGGGCATCGAGTACCGGCACGGC-GAGGCGTGGGT 56808 ||||| |||| || || ||| |||||||||| ||| | | || |||| | Sbjct 286 CGTGACGATCTCGACGCGCGCATGACCGGCATCGAGT-GGGGCCGGTCGGACGCGTTCCT 344 Query 56809 CGATGAGATTCCCGACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCCGACAGCCT 56868 ||| || |||||||| |||||| || ||||| || ||||||||||| | | ||| Sbjct 345 CGACGAACACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCT 404 Query 56869 GGTGA-CGATCGACGCCGAGCTGCGCCAGGTGCTCAACGTCAAGGG 56913 || | || || | | |||||| ||| | ||||||||||||| Sbjct 405 CGTCAGCGTCCGGC-ACACGCTGCGACAGATCGTCAACGTCAAGGG 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199441157140383