Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq108454 84.2 8e-12 seq90126 84.2 8e-12 seq119311 80.6 1e-10 seq106785 80.6 1e-10 seq100894 80.6 1e-10 >seq108454 Length=618 Score = 84.2 bits (92), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| || |||| || |||||||| ||||||||||| Sbjct 318 TGGTTGCGGGGGCAGGATTTGAACCTACGACCTCTGGGTTATGAGCCCAGCGAGCTACCG 377 Query 50168 AACTGCTCTACTCCGC 50183 |||||||| || |||| Sbjct 378 AACTGCTCCACCCCGC 393 >seq90126 Length=851 Score = 84.2 bits (92), Expect = 8e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| ||| ||||||||||| || |||| || |||||||| ||||||||||| Sbjct 271 TGGTTGCGGGGGCAGGATTTGAACCTACGACCTCTGGGTTATGAGCCCAGCGAGCTACCG 212 Query 50168 AACTGCTCTACTCCGC 50183 |||||||| || |||| Sbjct 211 AACTGCTCCACCCCGC 196 >seq119311 Length=506 Score = 80.6 bits (88), Expect = 1e-10 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| || ||||||||||| ||| ||| |||| |||||||||| |||||||||| Sbjct 375 TGGTTGCGGGAGCTGGATTTGAACCAGCGACCTTCAGGTTATGAGCCTGACGAGCTACCG 316 Query 50168 AACTGCTCTACTCCGCATTACGGG 50191 |||||| | |||| ||||| Sbjct 315 GGCTGCTCCATCCCGCGACACGGG 292 >seq106785 Length=636 Score = 80.6 bits (88), Expect = 1e-10 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164 || ||||||||| | | ||||||||||| | | ||| |||| |||||||||| ||||||| Sbjct 183 GTTTGGTTGCGGGGACAGGATTTGAACCTGTGACCTTCAGGTTATGAGCCTGACGAGCTA 242 Query 50165 CCGAACTGCTCTACTCCGC 50183 ||| |||||| || |||| Sbjct 243 CCGGGCTGCTCCACCCCGC 261 >seq100894 Length=704 Score = 80.6 bits (88), Expect = 1e-10 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164 || ||||||||| | | ||||||||||| | | ||| |||| |||||||||| ||||||| Sbjct 444 GTTTGGTTGCGGGGACAGGATTTGAACCTGTGACCTTCAGGTTATGAGCCTGACGAGCTA 503 Query 50165 CCGAACTGCTCTACTCCGC 50183 ||| |||||| || |||| Sbjct 504 CCGGGCTGCTCCACCCCGC 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181315110245118