Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_023549.1
Length=56789
Score E
Sequences producing significant alignments: (Bits) Value
seq108454 84.2 8e-12
seq90126 84.2 8e-12
seq119311 80.6 1e-10
seq106785 80.6 1e-10
seq100894 80.6 1e-10
>seq108454
Length=618
Score = 84.2 bits (92), Expect = 8e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167
||||||||| ||| ||||||||||| || |||| || |||||||| |||||||||||
Sbjct 318 TGGTTGCGGGGGCAGGATTTGAACCTACGACCTCTGGGTTATGAGCCCAGCGAGCTACCG 377
Query 50168 AACTGCTCTACTCCGC 50183
|||||||| || ||||
Sbjct 378 AACTGCTCCACCCCGC 393
>seq90126
Length=851
Score = 84.2 bits (92), Expect = 8e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167
||||||||| ||| ||||||||||| || |||| || |||||||| |||||||||||
Sbjct 271 TGGTTGCGGGGGCAGGATTTGAACCTACGACCTCTGGGTTATGAGCCCAGCGAGCTACCG 212
Query 50168 AACTGCTCTACTCCGC 50183
|||||||| || ||||
Sbjct 211 AACTGCTCCACCCCGC 196
>seq119311
Length=506
Score = 80.6 bits (88), Expect = 1e-10
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167
||||||||| || ||||||||||| ||| ||| |||| |||||||||| ||||||||||
Sbjct 375 TGGTTGCGGGAGCTGGATTTGAACCAGCGACCTTCAGGTTATGAGCCTGACGAGCTACCG 316
Query 50168 AACTGCTCTACTCCGCATTACGGG 50191
|||||| | |||| |||||
Sbjct 315 GGCTGCTCCATCCCGCGACACGGG 292
>seq106785
Length=636
Score = 80.6 bits (88), Expect = 1e-10
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164
|| ||||||||| | | ||||||||||| | | ||| |||| |||||||||| |||||||
Sbjct 183 GTTTGGTTGCGGGGACAGGATTTGAACCTGTGACCTTCAGGTTATGAGCCTGACGAGCTA 242
Query 50165 CCGAACTGCTCTACTCCGC 50183
||| |||||| || ||||
Sbjct 243 CCGGGCTGCTCCACCCCGC 261
>seq100894
Length=704
Score = 80.6 bits (88), Expect = 1e-10
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 50105 GTCTGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTA 50164
|| ||||||||| | | ||||||||||| | | ||| |||| |||||||||| |||||||
Sbjct 444 GTTTGGTTGCGGGGACAGGATTTGAACCTGTGACCTTCAGGTTATGAGCCTGACGAGCTA 503
Query 50165 CCGAACTGCTCTACTCCGC 50183
||| |||||| || ||||
Sbjct 504 CCGGGCTGCTCCACCCCGC 522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 181315110245118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |