Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023564.1 Length=52974 Score E Sequences producing significant alignments: (Bits) Value seq103996 87.8 6e-13 seq37623 87.8 6e-13 seq105772 82.4 3e-11 seq111431 80.6 9e-11 >seq103996 Length=666 Score = 87.8 bits (96), Expect = 6e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5590 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCGGGTTCCAGGTTCGAGTCCTG 5647 || ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| Sbjct 456 GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 87.8 bits (96), Expect = 6e-13 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5590 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCGGGTTCCAGGTTCGAGTCCTG 5647 || ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| Sbjct 1361 GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 82.4 bits (90), Expect = 3e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 5590 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCGGGTTCCAGGTTCGAGTCCTG 5647 || ||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||| Sbjct 556 GTGGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 >seq111431 Length=585 Score = 80.6 bits (88), Expect = 9e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 5644 CCTGNCGTGTGTGCAGACGCGAGATACCCAAGCGGC-AAAGGGATCTGACTGTAAATCAG 5702 || | || ||| ||| || || ||||| |||||| ||||||||||||||||||||||| Sbjct 209 CCGGTCGGGTGCGCAATGGCAAGTTACCCTAGCGGCCAAAGGGATCTGACTGTAAATCAG 150 Query 5703 AC-GCTTCGGCTTCGCAGGTTCGAGTCC 5729 || |||||| ||||| ||||||| ||| Sbjct 149 ACGGCTTCGCCTTCGGGGGTTCGAATCC 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169126476642448