Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq10933 89.7 7e-13 seq12261 84.2 3e-11 >seq10933 Length=18736 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||||||| || | || | |||| ||||||||||||||||| |||||||||||| | | Sbjct 15112 TGAATTTGTCTGTTACCTCACCATACAATGCTGATTTTGATGGTGATGAAATGAATATGC 15053 Query 52027 ATGTTCCTCAATCATATGGAGCTA 52050 ||||||||||||||| || | ||| Sbjct 15052 ATGTTCCTCAATCATTTGAAACTA 15029 >seq12261 Length=16166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||||||| || | || | |||| ||||||||||||||||| ||||||||||| | | Sbjct 2679 TGAATTTGTCTGTTACCTCACCATACAATGCTGATTTTGATGGTGATGAAATGAACATGC 2620 Query 52027 ATGTTCCTCAATCATATGGAGCTA 52050 ||||||||||||||| || | ||| Sbjct 2619 ATGTTCCTCAATCATTTGAAACTA 2596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634116940744920