Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023692.1 Length=48984 Score E Sequences producing significant alignments: (Bits) Value seq81249 138 4e-28 seq83344 104 7e-18 >seq81249 Length=1001 Score = 138 bits (152), Expect = 4e-28 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 38509 TGGTGCGAGCAGTGGGCGGGCGAGTGCCTGCGGATCCTCAAGCCTGGCGGTTACATGCTG 38568 ||||||||||||||||| | ||||||||| || |||||||| || ||||| | | || Sbjct 150 TGGTGCGAGCAGTGGGCCGCCGAGTGCCTCCGCATCCTCAAACCCGGCGGGCAGCTCCTC 91 Query 38569 GCGTTCGGAGGCTCGCGCACCTGGCACCGGCTCGCGTCTGCGATCGAGGACGCCGGTTTC 38628 || ||||| || | ||||||| ||||| ||||| | | |||||||||||||| ||| Sbjct 90 GCCTTCGGCGGTACTCGCACCTTCCACCGCCTCGCTGCCGGAATCGAGGACGCCGGATTC 31 Query 38629 GAGGTTCGCGACTCGATCGCGTGGCT 38654 ||| | |||||||||||||||||||| Sbjct 30 GAGATCCGCGACTCGATCGCGTGGCT 5 Score = 93.3 bits (102), Expect = 1e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 38230 CACTACCGCGACGAGCAGGTGACGTTGCACCACGGCGACTGCCTCGACGTGCTCGCGCAG 38289 |||||| | |||||| | |||| | ||| |||||||||||||||||| ||| | || Sbjct 312 CACTACTCCACCGAGCACGCGACGCTCTACCTCGGCGACTGCCTCGACGTCCTCCGGAAG 253 Query 38290 CTGCCCGACGCGAGCGTTGACGCCGTGGTGACTGACCCGCCCTACGGGATTCGGTTCATG 38349 |||||||||| ||||| ||||||| || || || |||||||||| | |||||| Sbjct 252 CTGCCCGACGGCAGCGTGCACGCCGTCGTCACCGATCCGCCCTACGCCCTCGACTTCATG 193 Query 38350 GGCAAGGCATGGGA 38363 ||| | | ||||| Sbjct 192 GGCCACGGCTGGGA 179 >seq83344 Length=962 Score = 104 bits (114), Expect = 7e-18 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 36875 GAGCAGCTCCGCACGGCGATCGAGCTCGTCGTGACAACACAGTTCGCCTCGGGCACGATG 36934 |||| ||| | | ||||| |||||| ||||| || || ||||||| |||| | ||||| Sbjct 314 GAGCTGCTGCTCGCGGCGGTCGAGCAGGTCGTCACGACCCAGTTCGGCTCGACCTCGATG 373 Query 36935 CTGCAACGCAAGCTCAACGTCGGGTTCGCCCGGTCGCAACGCCTGCTCGACGAGATGGAG 36994 ||||| ||||||||| |||||||||||| | | || ||| | ||| ||||||| Sbjct 374 CTGCAGCGCAAGCTCCGCGTCGGGTTCGCGAAGGCCGGCCGGCTGATGGACCTGATGGAG 433 Query 36995 CAACTCGG--CATCGTCGGCGAGGCTGAGGGCAGCAAGGCGCGCCCGGTCTACTTCAAGG 37052 | ||| ||||| ||| | | |||||| ||||||||| || | || || Sbjct 434 --TCGCGGAAGATCGTGGGCCCGTCCGAGGGCTCGAAGGCGCGCGACGTGCTCGTCTCGG 491 Query 37053 CCGACGACCTCGCCGGGGCGCTGGCGCTGCTCGGGGGC 37090 ||||| | ||||||| |||| |||| | || ||||| Sbjct 492 CCGACCAGCTCGCCGACACGCTCGCGCAGATCCGGGGC 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156378731406628