Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023697.1 Length=48420 Score E Sequences producing significant alignments: (Bits) Value seq97958 91.5 5e-14 seq79087 89.7 2e-13 seq95122 82.4 2e-11 seq83344 82.4 2e-11 >seq97958 Length=744 Score = 91.5 bits (100), Expect = 5e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 13721 TGGAACGCGATTGCGCAGGGCGAATCAGGCGGCAACTGGCACATCAACACCGGCAACGGC 13780 |||||| ||| |||| |||| || || ||||||||| | |||||||| ||||||| Sbjct 76 TGGAACCGGATCGCGCGCTGCGAGTCCGGGGGCAACTGGAAGATCAACACGCACAACGGC 135 Query 13781 TACTACGGCGGTCTGCAGTTCAAGCAGTCGAGCTGGGAGGCTGCGGGCGGCACCAACTAC 13840 ||||||||||| ||||||||||| | | | |||| || | || |||||| ||| | | Sbjct 136 TACTACGGCGGCCTGCAGTTCAACCTCGCCACCTGGAAGTCGGCCGGCGGCCGCAAGTTC 195 Query 13841 GCG 13843 ||| Sbjct 196 GCG 198 >seq79087 Length=1043 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 13740 GCGAATCAGGCGGCAACTGGCACATCAACACCGGCAACGGCTACTACGGCGGTCTGCAGT 13799 |||| || |||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 754 GCGAGTCCGGCGGCAACTGGTCGATCAACACCGGCAACGGCTACTACGGCGGGCTGCAGT 695 Query 13800 TCAAGCAGTCGAGCTGG 13816 |||| | | || |||| Sbjct 694 TCAACCTGCAGACCTGG 678 >seq95122 Length=780 Score = 82.4 bits (90), Expect = 2e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 13740 GCGAATCAGGCGGCAACTGGCACATCAACACCGGCAACGGCTACTACGGCGGTCTGCAGT 13799 |||| || |||||||||||| |||| ||||||||||||| ||||||||||| ||||||| Sbjct 344 GCGAGTCGGGCGGCAACTGGAGCATCGACACCGGCAACGGGTACTACGGCGGGCTGCAGT 403 Query 13800 TCA 13802 ||| Sbjct 404 TCA 406 >seq83344 Length=962 Score = 82.4 bits (90), Expect = 2e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 35478 GCAGCTGCGCCACGCGATCGAGCTAGTGGTGACGAGCCAGTTCGCCTCGGCGTCGATGCT 35537 || ||||| | ||| |||||| || || |||| |||||||| |||| | |||||||| Sbjct 316 GCTGCTGCTCGCGGCGGTCGAGCAGGTCGTCACGACCCAGTTCGGCTCGACCTCGATGCT 375 Query 35538 GCAACGCAAGCTCGACGTCGGGTTCGCCCGTGCGCAACGCCTGCTCGACGAAATGGAACA 35597 ||| ||||||||| |||||||||||| || || ||| | ||| ||||| Sbjct 376 GCAGCGCAAGCTCCGCGTCGGGTTCGCGAAGGCCGGCCGGCTGATGGACCTGATGGAGTC 435 Query 35598 GCTCGGCATCGTCGGCGAGGCGCAGGGCAGCAAGGCACGCGCGGTCTACTTCGCCGCCGA 35657 || ||||| ||| | | ||||| ||||| |||| || | || | ||||| Sbjct 436 GCGGAAGATCGTGGGCCCGTCCGAGGGCTCGAAGGCGCGCGACGTGCTCGTCTCGGCCGA 495 Query 35658 CGACCTGGCCGGAGCGCTCGCGC 35680 | | || |||| ||||||||| Sbjct 496 CCAGCTCGCCGACACGCTCGCGC 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154576794486076