Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023699.1 Length=59016 Score E Sequences producing significant alignments: (Bits) Value seq81249 170 7e-38 >seq81249 Length=1001 Score = 170 bits (188), Expect = 7e-38 Identities = 221/301 (73%), Gaps = 12/301 (4%) Strand=Plus/Minus Query 43734 CGATCAGGTGACGCTCTACCACGGCGACTGCCTGCACGTGCTCGCCGAGCTGCCCGATCG 43793 ||| || | ||||||||||| |||||||||||| |||| ||| |||||||||| | Sbjct 301 CGAGCACGCGACGCTCTACCTCGGCGACTGCCTCGACGTCCTCCGGAAGCTGCCCGACGG 242 Query 43794 CAGCGTCGACGCCGTGGTTTGCGACCCACCCTACGAGCTGGAGTTCATGGGCAAGAAGTG 43853 |||||| ||||||| || ||| || ||||||| || || ||||||||| | || Sbjct 241 CAGCGTGCACGCCGTCGTCACCGATCCGCCCTACGCCCTCGACTTCATGGGCCACGGCTG 182 Query 43854 GGACGGCTCGGGCATCGCC---TTCGAC-----GT-CGAGATGTGGAA-GC--AATGCCT 43901 ||| ||| | || | ||| | || |||| |||| || | ||||| Sbjct 181 GGATCGCTACACCCCCGGCGAGTTCCAGCACTGGTGCGAGCAGTGGGCCGCCGAGTGCCT 122 Query 43902 GCGGGTCCTCAAACCCGGTGGGCACCTGCTCGCCTTCGGCGGCTCCCGCACCTGGCACCG 43961 || ||||||||||||| ||||| || |||||||||||||| | ||||||| ||||| Sbjct 121 CCGCATCCTCAAACCCGGCGGGCAGCTCCTCGCCTTCGGCGGTACTCGCACCTTCCACCG 62 Query 43962 GCTCGCGTCGGCCATCGAGGACGCGGGCTTCGAGATCCGCGACTCCATCGCCTGGCTCAA 44021 ||||| | | ||||||||||| || ||||||||||||||||| ||||| |||||| | Sbjct 61 CCTCGCTGCCGGAATCGAGGACGCCGGATTCGAGATCCGCGACTCGATCGCGTGGCTCTA 2 Query 44022 C 44022 | Sbjct 1 C 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188430205142404