Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023704.1 Length=51421 Score E Sequences producing significant alignments: (Bits) Value seq81249 163 9e-36 seq103996 89.7 2e-13 seq37623 89.7 2e-13 seq105772 84.2 7e-12 >seq81249 Length=1001 Score = 163 bits (180), Expect = 9e-36 Identities = 136/165 (82%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 40436 GTACAGCCACGCGATGGAGTCGCGGATCTCGAAACCGGCGTCCTCAAT---GGCAACGGT 40492 ||| ||||||||||| ||||||||||||||||| ||||||||||| || |||| || Sbjct 1 GTAGAGCCACGCGATCGAGTCGCGGATCTCGAATCCGGCGTCCTCGATTCCGGCAGCG-- 58 Query 40493 CAGGCGGTGCCAGGTGCGCGAACCTCCGAAGGCGAACAGGTGCCCGCCCGGTTTGAGGAC 40552 |||||||| ||||||| | ||| |||||||||| || |||||||| |||||||||| Sbjct 59 -AGGCGGTGGAAGGTGCGAGTACCGCCGAAGGCGAGGAGCTGCCCGCCGGGTTTGAGGAT 117 Query 40553 TCGCAGGCACTCGGTCGCCCACTGCGTGCACCACTGTTGGAACTC 40597 || |||||||||| ||||||||| |||||| || |||||||| Sbjct 118 GCGGAGGCACTCGGCGGCCCACTGCTCGCACCAGTGCTGGAACTC 162 >seq103996 Length=666 Score = 89.7 bits (98), Expect = 2e-13 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2418 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2473 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 453 GCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 89.7 bits (98), Expect = 2e-13 Identities = 54/56 (96%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2418 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2473 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1358 GCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 84.2 bits (92), Expect = 7e-12 Identities = 53/56 (95%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 2418 GCTCAATTTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 2473 |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 553 GCTCAATT-GGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164164760263694