Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06]
133,589 sequences; 833,240,550 total letters
Query= NC_023724.1
Length=62991
Score E
Sequences producing significant alignments: (Bits) Value
seq37323 223 1e-53
seq78026 122 4e-23
seq78025 114 5e-21
seq103996 95.1 5e-15
seq37623 95.1 5e-15
seq105772 91.5 6e-14
>seq37323
Length=3330
Score = 223 bits (246), Expect = 1e-53
Identities = 524/779 (67%), Gaps = 43/779 (6%)
Strand=Plus/Minus
Query 52337 GTGGCGTGAACAACTCGGCACACTCGGCGGCGGCAACCATTTCATCGAACTGTGCGTCGA 52396
|||||| | || || ||| | |||||| |||||||||| |||||||| | | ||||||
Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842
Query 52397 CCACCGCGGCTGCG-TGTGGCTGTTCCTGCACTCCGGTTCACGTGGCGTCGGCAACAAGA 52455
| | || |||| ||||||||||||||||||| || || ||||| |||||| ||
Sbjct 1841 CGAGACCGA-TGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGA 1783
Query 52456 TCGCCCAGAAGCACATCAAGATCGCGCAAGCCGA-ATG-CG-ACCTGTACGGCATCGAAC 52512
|||||||| ||||||||||| ||||||| ||||| ||| || |||| | ||| | |
Sbjct 1782 TCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGT---GGATCCAGC 1726
Query 52513 TGCCCGGCGGCAACAAGGATCTGGCGTACCTCGTCGAAGGTGAACCGTCGTTTGACGCGT 52572
|||||| | || || ||||| ||||| || || || ||| ||| ||| |
Sbjct 1725 TGCCCGACCGC------GACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCT 1672
Query 52573 ACCTGAATGAGCTGCGTTGGGCGCAACAGTTCGCACTGTTCAACCGCGACGAAATGATGG 52632
|| | || ||||| |||||||| | ||||| ||| | |||||||| || |||||||
Sbjct 1671 ACATCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGG 1612
Query 52633 ACCGGTACCGGCAGGCGTTCGCACGCTGGATGGGCATCGGTGTCGATGAGGCGCCGGTCG 52692
|||| | ||| ||| | | | ||| | ||| | ||| ||||
Sbjct 1611 ACCG--------CGTCGTGCGCCAGGTCTCCGAGCACC----TCGGT---GCGGCGGT-- 1569
Query 52693 TCGAAATCGCCGGCGAACGTGTCAACGCGCACCACAACTACACGGTGCAGGAATG---CG 52749
| | || |||| || ||||| |||||||||| |||| |||||| | |
Sbjct 1568 --GCAGGAGC--GCGAGCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACT 1513
Query 52750 TCGACGGTGAGCTGGTGTGGGTGACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGC 52809
||| | |||| || ||| || |||||||||| |||||| ||| | ||||| |
Sbjct 1512 TCGGCCGTGA---CGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACC 1456
Query 52810 GTGGCCTGATCCCGGGAAGCATGGGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACC 52869
||||||||||| || ||||| ||||| ||||| || || || ||| |||
Sbjct 1455 TCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGACC 1396
Query 52870 CGCAGGGTCTGCAGTCTGCGCCTCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTC 52929
| || || | || |||| ||||||||||| || | | || || | || || |
Sbjct 1395 GGATGGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGC 1336
Query 52930 GCAAGCTGTTCACCGTCGACGACCTGGCTGACCGTATGCGCGGCATCGAGTACCGCCACG 52989
| ||| |||||| |||| | ||| || ||| |||||||||| ||| ||
Sbjct 1335 GGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACA 1276
Query 52990 GTGAGGCGTGGGTCGACGAAATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCACG 53049
||||| | | ||||| |||||| | || ||||||||||||||| |||||| ||
Sbjct 1275 CCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCG 1216
Query 53050 ACGCCGGGGAACTCGTGTCCGTTGACGCTGA-ACTGCGTCAAATCGTTAACGTCAAGGG 53107
|||| | || || || ||| || || | ||||| || | || ||||| |||||
Sbjct 1215 ACGCGGCCGACCTGGTCACCG-TGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158
Score = 105 bits (116), Expect = 3e-18
Identities = 188/268 (70%), Gaps = 11/268 (4%)
Strand=Plus/Minus
Query 51948 GCCAGCGAAGTGGACGACGAAACCATCAACCAGGCAATGCAGATCAC--CGAAC-TGCCG 52004
||||||| | || |||| || || | ||||| |||| ||| ||| | ||||
Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGC---GCAGCGCACGTCGACCATGCCC 2612
Query 52005 TTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGTCTGTT 52064
||| | || |||||| | ||||| ||||||||||||||| | || || | | ||
Sbjct 2611 TTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTC 2552
Query 52065 GGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACATCGGC 52124
|| | || ||||| || | |||||| || || || |||||||| || || |||||||||
Sbjct 2551 GGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGC 2492
Query 52125 TGCGGCATGATCGCCACACTGACCGCA-TTCACCCAGGACGACAT---CGCCGGCCGCGA 52180
||||| ||||||| | | | |||| ||| || | |||| | ||| || ||||
Sbjct 2491 TGCGGGATGATCG-CGGTCCGCACGCAGTTCGACCGGTCCGACCTGGAGGCCCGCGGCGA 2433
Query 52181 CCTGGCCGCGCTGCGTGAGTCGATCGAG 52208
|||||||| ||||| || |||||||
Sbjct 2432 CCTGGCCGGCCTGCGGCAGCAGATCGAG 2405
>seq78026
Length=538
Score = 122 bits (134), Expect = 4e-23
Identities = 274/402 (68%), Gaps = 16/402 (4%)
Strand=Plus/Plus
Query 52714 TCAACGCGCACCACAACTACACGGTGCAGGA-ATGCGTCGACGGTGAGCTGGTGTGGGTG 52772
||||| |||||||||||||| | |||||| | || | ||| || || ||| |
Sbjct 56 TCAACTGCCACCACAACTACACCGCGCAGGAGAAGCA-CTTCGGCAAGACCGTCTGGCTC 114
Query 52773 ACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCCGGGAAGCATG 52832
|||||||||| || ||| ||||| |||| || || |||||||| || |||
Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174
Query 52833 GGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACCCGCAGGGTCTGCAGT-CTGCGCC 52891
|| | || || || |||||| |||| |||||||||| | ||||| | || ||
Sbjct 175 GGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC-CC 233
Query 52892 TCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTCGCAAGCTGTTCACCGTCGACGA 52951
||||| || || || || ||| || || || ||||||| |||||| |||||
Sbjct 234 GCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGA 293
Query 52952 CCTGGCTGACCGTATGCGCGGCATCGAGTACCGCCACGGT--GAGGCGTGGGTCGACGAA 53009
|| | | || ||| ||||||||||| || |||| || |||| ||||||||
Sbjct 294 TCTCGACGCGCGCATGACCGGCATCGAGTGGGGC--CGGTCGGACGCGTTCCTCGACGAA 351
Query 53010 ATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGCCGGGGAACTCGT---- 53065
||| ||||| |||||| |||||||| || ||| |||||| | || |||||
Sbjct 352 CACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGC 411
Query 53066 GTCCGTTGACGCTGAACTGCGTCAAATCGTTAACGTCAAGGG 53107
||||| || | ||||| || ||||| |||||||||||
Sbjct 412 GTCCG-GCACAC---GCTGCGACAGATCGTCAACGTCAAGGG 449
>seq78025
Length=530
Score = 114 bits (126), Expect = 5e-21
Identities = 357/539 (66%), Gaps = 24/539 (4%)
Strand=Plus/Plus
Query 52072 TCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACATCGGCTGCGGCA 52131
|||||||||| | ||||| ||||||| || |||||||| ||||||||||| ||||| |
Sbjct 1 TCATCCCCACGCTGGGCGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGGTGCGGGA 60
Query 52132 TGATCGCCACACTGACCGCATTCACCCAGGACGACATCGCCGGCCGCGACCTGGCCGCGC 52191
|||| ||| | ||| | |||||| || || |||| | ||||| || | |
Sbjct 61 TGATGGCCGTCCGCACCCCGTTCACCGCCGAGGAGTTCGCAGCGGTCGACCGCGCGGAAC 120
Query 52192 TGCGTGAGTCGATCGAGTCGG-CGATCCCCATGTCGGCCGGCGGATACAACAAGAGCCTC 52250
||| | | ||| || || | | || ||||||| || | ||||||| | ||
Sbjct 121 TGCACGCCGCCATC-AGCCGCACCGTGCCGCTGTCGGCGGGTCGCTACAACACCGTCGTC 179
Query 52251 GACCGGTACCCGTTCACCGCCGGCCGGATCGAGCATCTTGAAGACGAAGCGGAAC-GCCG 52309
||| || ||| | | || | |||||| || || | | | |||| | |
Sbjct 180 GAC-GGCACCG-----CGGTCGCGCACATCGAGGCCCTGGAGGCCAAGGCGGGCGTGGAG 233
Query 52310 CAACGTCGACCTGTCACACTCCCCGAAGTGGCGTGAACAACTCGGCACACTCGGCGGCGG 52369
|| | |||| | | | ||| |||||| || || || | ||||| |||
Sbjct 234 CAG-GCCGACGCGAT---CGCGCCGG-GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGG 288
Query 52370 CAACCATTTCATCGAACTGTGCGTCGACCACCGCGGCTGCGTGTGGCTGTTCCTGCACTC 52429
|||||| |||||||| | || ||||| | | || | | ||||||||||||||||||||
Sbjct 289 CAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGACCGGGTGTGGCTGTTCCTGCACTC 348
Query 52430 CGGTTCACGTGGCGTCGGCAACAAGATCGC--CCAGAAGCACATCAAGATCGCGCAAGCC 52487
|| || || || || ||||||||| |||| || | |||||||||| ||||||| |
Sbjct 349 GGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCG--GCACATCAAGGTCGCGCAGGAG 406
Query 52488 GAATGCGACCTGTACGGCATCGAACTGCCCGGCGGCAACAAGGATCTGGCGTACCTCGTC 52547
| ||| ||| |||| | | |||| || | | | ||| || || |||||||||
Sbjct 407 CAGTGC-ACC----CGGCGGTGGATCGCCCTGCCGGATC-CGGACCTCGCCTACCTCGTC 460
Query 52548 GAAGGTGAACCGTCGTTTGACGCGTACCTGAATGAGCTGCGTTGGGCGCAACAGTTCGC 52606
|| ||||| | ||| | ||||| | | ||||| |||||||| |||||||
Sbjct 461 GAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGGCCCTGCGGTGGGCGCAGGAGTTCGC 519
>seq103996
Length=666
Score = 95.1 bits (104), Expect = 5e-15
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 453 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399
>seq37623
Length=2350
Score = 95.1 bits (104), Expect = 5e-15
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1358 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304
>seq105772
Length=647
Score = 91.5 bits (100), Expect = 6e-14
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Minus
Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 553 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 201118421905608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |