Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Castanea_20mollissima_20[genbank_20GCA_5F000763605.1_202014-10-06] 133,589 sequences; 833,240,550 total letters Query= NC_023724.1 Length=62991 Score E Sequences producing significant alignments: (Bits) Value seq37323 223 1e-53 seq78026 122 4e-23 seq78025 114 5e-21 seq103996 95.1 5e-15 seq37623 95.1 5e-15 seq105772 91.5 6e-14 >seq37323 Length=3330 Score = 223 bits (246), Expect = 1e-53 Identities = 524/779 (67%), Gaps = 43/779 (6%) Strand=Plus/Minus Query 52337 GTGGCGTGAACAACTCGGCACACTCGGCGGCGGCAACCATTTCATCGAACTGTGCGTCGA 52396 |||||| | || || ||| | |||||| |||||||||| |||||||| | | |||||| Sbjct 1901 GTGGCGGCAGCAGCTGGGCTCGCTCGGCAGCGGCAACCACTTCATCGAGGTCTCCGTCGA 1842 Query 52397 CCACCGCGGCTGCG-TGTGGCTGTTCCTGCACTCCGGTTCACGTGGCGTCGGCAACAAGA 52455 | | || |||| ||||||||||||||||||| || || ||||| |||||| || Sbjct 1841 CGAGACCGA-TGCGGTGTGGCTGTTCCTGCACTCGGGCAGCCGGGGCGTGGGCAACCGGA 1783 Query 52456 TCGCCCAGAAGCACATCAAGATCGCGCAAGCCGA-ATG-CG-ACCTGTACGGCATCGAAC 52512 |||||||| ||||||||||| ||||||| ||||| ||| || |||| | ||| | | Sbjct 1782 TCGCCCAGCAGCACATCAAGGTCGCGCAGGCCGAGATGACGCGGCTGT---GGATCCAGC 1726 Query 52513 TGCCCGGCGGCAACAAGGATCTGGCGTACCTCGTCGAAGGTGAACCGTCGTTTGACGCGT 52572 |||||| | || || ||||| ||||| || || || ||| ||| ||| | Sbjct 1725 TGCCCGACCGC------GACCTGGCCTACCTGGTGGAGGGCACGCCGCAGTTCGACCGCT 1672 Query 52573 ACCTGAATGAGCTGCGTTGGGCGCAACAGTTCGCACTGTTCAACCGCGACGAAATGATGG 52632 || | || ||||| |||||||| | ||||| ||| | |||||||| || ||||||| Sbjct 1671 ACATCGCCGAACTGCGATGGGCGCAGCGCTTCGCCCTGCTGAACCGCGAGGAGATGATGG 1612 Query 52633 ACCGGTACCGGCAGGCGTTCGCACGCTGGATGGGCATCGGTGTCGATGAGGCGCCGGTCG 52692 |||| | ||| ||| | | | ||| | ||| | ||| |||| Sbjct 1611 ACCG--------CGTCGTGCGCCAGGTCTCCGAGCACC----TCGGT---GCGGCGGT-- 1569 Query 52693 TCGAAATCGCCGGCGAACGTGTCAACGCGCACCACAACTACACGGTGCAGGAATG---CG 52749 | | || |||| || ||||| |||||||||| |||| |||||| | | Sbjct 1568 --GCAGGAGC--GCGAGCGGATCAACTGCCACCACAACTTCACGCAGCAGGAGCGGCACT 1513 Query 52750 TCGACGGTGAGCTGGTGTGGGTGACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGC 52809 ||| | |||| || ||| || |||||||||| |||||| ||| | ||||| | Sbjct 1512 TCGGCCGTGA---CGTCTGGCTGTCCCGCAAGGGCGCCATCCAGGCGCGTCAGGGCGACC 1456 Query 52810 GTGGCCTGATCCCGGGAAGCATGGGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACC 52869 ||||||||||| || ||||| ||||| ||||| || || || ||| ||| Sbjct 1455 TCGGCCTGATCCCCGGGTCGATGGGGACCGCCTCCTACGTGGTGGAGGGGCGCGGCGACC 1396 Query 52870 CGCAGGGTCTGCAGTCTGCGCCTCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTC 52929 | || || | || |||| ||||||||||| || | | || || | || || | Sbjct 1395 GGATGGCGCTCGACTCGTCGCCGCACGGCGCCGGGCGCGTGCTGTCGCGGTCGAAGGCGC 1336 Query 52930 GCAAGCTGTTCACCGTCGACGACCTGGCTGACCGTATGCGCGGCATCGAGTACCGCCACG 52989 | ||| |||||| |||| | ||| || ||| |||||||||| ||| || Sbjct 1335 GGAAGGCGTTCACGATCGAGCAGCTGCGCGAGGCGATGACGGGCATCGAGTTCCGGGACA 1276 Query 52990 GTGAGGCGTGGGTCGACGAAATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCACG 53049 ||||| | | ||||| |||||| | || ||||||||||||||| |||||| || Sbjct 1275 CCGAGGCCTTCCTGGACGAGATCCCGCAGGCCTACAAGCCGATCGACCAGGTGATGGCCG 1216 Query 53050 ACGCCGGGGAACTCGTGTCCGTTGACGCTGA-ACTGCGTCAAATCGTTAACGTCAAGGG 53107 |||| | || || || ||| || || | ||||| || | || ||||| ||||| Sbjct 1215 ACGCGGCCGACCTGGTCACCG-TGCGGCACACCCTGCGCCAGCTGGTCAACGTGAAGGG 1158 Score = 105 bits (116), Expect = 3e-18 Identities = 188/268 (70%), Gaps = 11/268 (4%) Strand=Plus/Minus Query 51948 GCCAGCGAAGTGGACGACGAAACCATCAACCAGGCAATGCAGATCAC--CGAAC-TGCCG 52004 ||||||| | || |||| || || | ||||| |||| ||| ||| | |||| Sbjct 2668 GCCAGCGTGCTCGAGGACGTCACGCTCGAGCAGGC---GCAGCGCACGTCGACCATGCCC 2612 Query 52005 TTCGTGCATCCGCACGTTGCCCTCATGCCCGACGCGCACGTCGGCAAAGGTTCGTCTGTT 52064 ||| | || |||||| | ||||| ||||||||||||||| | || || | | || Sbjct 2611 TTCATCCACCCGCACCTGGCCCTGATGCCCGACGCGCACCTGGGGCTCGGCGCCACGGTC 2552 Query 52065 GGTACCGTCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACATCGGC 52124 || | || ||||| || | |||||| || || || |||||||| || || ||||||||| Sbjct 2551 GGCTCGGTGATCCCGACGCTCGGCGCCGTGATGCCGGCCGCGGTGGGGGTGGACATCGGC 2492 Query 52125 TGCGGCATGATCGCCACACTGACCGCA-TTCACCCAGGACGACAT---CGCCGGCCGCGA 52180 ||||| ||||||| | | | |||| ||| || | |||| | ||| || |||| Sbjct 2491 TGCGGGATGATCG-CGGTCCGCACGCAGTTCGACCGGTCCGACCTGGAGGCCCGCGGCGA 2433 Query 52181 CCTGGCCGCGCTGCGTGAGTCGATCGAG 52208 |||||||| ||||| || ||||||| Sbjct 2432 CCTGGCCGGCCTGCGGCAGCAGATCGAG 2405 >seq78026 Length=538 Score = 122 bits (134), Expect = 4e-23 Identities = 274/402 (68%), Gaps = 16/402 (4%) Strand=Plus/Plus Query 52714 TCAACGCGCACCACAACTACACGGTGCAGGA-ATGCGTCGACGGTGAGCTGGTGTGGGTG 52772 ||||| |||||||||||||| | |||||| | || | ||| || || ||| | Sbjct 56 TCAACTGCCACCACAACTACACCGCGCAGGAGAAGCA-CTTCGGCAAGACCGTCTGGCTC 114 Query 52773 ACCCGCAAGGGTGCCATCAGCGCGAAGCTCGGCGAGCGTGGCCTGATCCCGGGAAGCATG 52832 |||||||||| || ||| ||||| |||| || || |||||||| || ||| Sbjct 115 TCCCGCAAGGGGGCGATCGACGCGAGCGCCGGCCGGCCCGGGCTGATCCCCGGGTCGATG 174 Query 52833 GGCACCGCATCCTATGTCGTCACCGGCAAGGGCAACCCGCAGGGTCTGCAGT-CTGCGCC 52891 || | || || || |||||| |||| |||||||||| | ||||| | || || Sbjct 175 GGAGCGGCGTCGTACGTCGTCGAGGGCAGGGGCAACCCGGTCGCGCTGCACAGCAGC-CC 233 Query 52892 TCACGGCGCCGGCCGAAGGTTCTCCCGAACCAAAGCTCGCAAGCTGTTCACCGTCGACGA 52951 ||||| || || || || ||| || || || ||||||| |||||| ||||| Sbjct 234 GCACGGGGCGGGGCGCGAGTACTCGCGGTCCGCGGCGCGCAAGCGCTTCACCCGTGACGA 293 Query 52952 CCTGGCTGACCGTATGCGCGGCATCGAGTACCGCCACGGT--GAGGCGTGGGTCGACGAA 53009 || | | || ||| ||||||||||| || |||| || |||| |||||||| Sbjct 294 TCTCGACGCGCGCATGACCGGCATCGAGTGGGGC--CGGTCGGACGCGTTCCTCGACGAA 351 Query 53010 ATCCCGGACGCTTACAAGCCGATCGACGTTGTGATGCACGACGCCGGGGAACTCGT---- 53065 ||| ||||| |||||| |||||||| || ||| |||||| | || ||||| Sbjct 352 CACCCCGACGCGTACAAGGACATCGACGTGGTCATGGCCGACGCGGCCGACCTCGTCAGC 411 Query 53066 GTCCGTTGACGCTGAACTGCGTCAAATCGTTAACGTCAAGGG 53107 ||||| || | ||||| || ||||| ||||||||||| Sbjct 412 GTCCG-GCACAC---GCTGCGACAGATCGTCAACGTCAAGGG 449 >seq78025 Length=530 Score = 114 bits (126), Expect = 5e-21 Identities = 357/539 (66%), Gaps = 24/539 (4%) Strand=Plus/Plus Query 52072 TCATCCCCACCCGCGGCGCAGTCATCCCCGCCGCGGTCGGTGTCGACATCGGCTGCGGCA 52131 |||||||||| | ||||| ||||||| || |||||||| ||||||||||| ||||| | Sbjct 1 TCATCCCCACGCTGGGCGCGATCATCCCGGCGGCGGTCGGCGTCGACATCGGGTGCGGGA 60 Query 52132 TGATCGCCACACTGACCGCATTCACCCAGGACGACATCGCCGGCCGCGACCTGGCCGCGC 52191 |||| ||| | ||| | |||||| || || |||| | ||||| || | | Sbjct 61 TGATGGCCGTCCGCACCCCGTTCACCGCCGAGGAGTTCGCAGCGGTCGACCGCGCGGAAC 120 Query 52192 TGCGTGAGTCGATCGAGTCGG-CGATCCCCATGTCGGCCGGCGGATACAACAAGAGCCTC 52250 ||| | | ||| || || | | || ||||||| || | ||||||| | || Sbjct 121 TGCACGCCGCCATC-AGCCGCACCGTGCCGCTGTCGGCGGGTCGCTACAACACCGTCGTC 179 Query 52251 GACCGGTACCCGTTCACCGCCGGCCGGATCGAGCATCTTGAAGACGAAGCGGAAC-GCCG 52309 ||| || ||| | | || | |||||| || || | | | |||| | | Sbjct 180 GAC-GGCACCG-----CGGTCGCGCACATCGAGGCCCTGGAGGCCAAGGCGGGCGTGGAG 233 Query 52310 CAACGTCGACCTGTCACACTCCCCGAAGTGGCGTGAACAACTCGGCACACTCGGCGGCGG 52369 || | |||| | | | ||| |||||| || || || | ||||| ||| Sbjct 234 CAG-GCCGACGCGAT---CGCGCCGG-GTGGCGGCTGCAGCTGGGTTCGCTCGGTTCCGG 288 Query 52370 CAACCATTTCATCGAACTGTGCGTCGACCACCGCGGCTGCGTGTGGCTGTTCCTGCACTC 52429 |||||| |||||||| | || ||||| | | || | | |||||||||||||||||||| Sbjct 289 CAACCACTTCATCGAGGTCAGCCTCGACGAGCTCGACCGGGTGTGGCTGTTCCTGCACTC 348 Query 52430 CGGTTCACGTGGCGTCGGCAACAAGATCGC--CCAGAAGCACATCAAGATCGCGCAAGCC 52487 || || || || || ||||||||| |||| || | |||||||||| ||||||| | Sbjct 349 GGGCTCGCGCGGGGTGGGCAACAAGCTCGCGACCCG--GCACATCAAGGTCGCGCAGGAG 406 Query 52488 GAATGCGACCTGTACGGCATCGAACTGCCCGGCGGCAACAAGGATCTGGCGTACCTCGTC 52547 | ||| ||| |||| | | |||| || | | | ||| || || ||||||||| Sbjct 407 CAGTGC-ACC----CGGCGGTGGATCGCCCTGCCGGATC-CGGACCTCGCCTACCTCGTC 460 Query 52548 GAAGGTGAACCGTCGTTTGACGCGTACCTGAATGAGCTGCGTTGGGCGCAACAGTTCGC 52606 || ||||| | ||| | ||||| | | ||||| |||||||| ||||||| Sbjct 461 GAGGGTGAGCGCGAGTTCTGGTCCTACCTCGAGGCCCTGCGGTGGGCGCAGGAGTTCGC 519 >seq103996 Length=666 Score = 95.1 bits (104), Expect = 5e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 453 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 399 >seq37623 Length=2350 Score = 95.1 bits (104), Expect = 5e-15 Identities = 54/55 (98%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1358 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGAGTCCTG 1304 >seq105772 Length=647 Score = 91.5 bits (100), Expect = 6e-14 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 597 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 651 |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 553 GCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201118421905608